Results for "go"
Bio-Scripts
The following files for plugin example would go in /mod/example/ actions/ example/ action.php other_action.php classes/ VendorNamespace/ Plu...849 days ago
Installing SEVA environment in Conda !
...############################################################## | 100% r-googlesheets4-0.3. | 479 KB |...############################################################## | 100% r-googledrive-1.0.1 | 1.6 MB |...849 days ago
Extract all fasta sequences except ids !
...er.pl omi_kmer19_formated.fa > omi_kmer19_formated_numbered.fa # cat all *.rd file cat *.rd > all_reads_hits #count the lines in each file -- go in folder for FILE in *; do...840 days ago
- ...1 | h06a4308_3633 4.2 MB pango-1.42.0 |...main/linux-64::libgcc-ng-9.3.0-h5101ec6_17 libgomp pkgs/main/linux-...e_0 pango pkgs/main/linux-64::pango-1.42.0-h377f3fa_0 pcre...
837 days ago
- ...th --with-x=no which tells R to install without X11, a windowing system for displays. We’d also specify --prefix which is where the R framework will go, this includes the additional...
835 days ago
Bash command to explore assembly summary genbank !
wget https://ftp.ncbi.nlm.nih.gov/genomes/genbank/assembly_summary_genbank.txt pip3 install csvkit csvcut -t -K 1 -c 'excluded_from_refseq' assembly_summary_genbank.txt \ | tail -n +2 | tr ";" "\n" \ | sed -e 's/^ //' -e 's/ $//' | grep -v '""' \ | sort | uniq -c | sort -nr780 days ago
- (base) [lege@hn1 testVisanu]$ conda create -n pythonENV python=3.10 scipy=1.13.0 astroid babel Channels: - conda-forge - bioconda - defaults Platform: linux-64 Collecting package metadata (repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
4 days ago
Download lumpy skin disease data !
Location https://www.ncbi.nlm.nih.gov/sra?linkname=bioproject_sra_all&from_uid=880745 The raw genome sequence data from the 2022 outbreak in India is available in the SRA Project PRJNA880745422 days ago
- #!/usr/bin/env Rscript library(RCircos) # usage: Rscript make_circos.r # parse args args = commandArgs(trailingOnly=TRUE) sv.file
311 days ago
