Results for "header"
Blogs
BBTools for bioinformatician !
...ads to the same output file but only print the headers once. I have not tried that....fq samplereadstarget=100k Changing fasta headers Remove anything after the...iles when the tag is present in the fastq read header (illumina) Code:...2264 days ago
Install ImageMagick from Unix Source
...g for egrep... /bin/grep -Echecking for ANSI C header files... yeschecking for sys/...cc needs -traditional... nochecking for ANSI C header files... (cached) yeschecking...is complete... nochecking for X... libraries , headers checking for gethostbyname.....2139 days ago
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- Spines Spines is a collection of software tools, developed and used by the Vertebrate Genome Biology Group at the Broad Institute. It provides basic data str...
3001 days ago
SimLoRD: A read simulator for third generation sequencing reads
SimLoRD is a read simulator for third generation sequencing reads and is currently focused on the Pacific Biosciences SMRT error model. Reads are simulated from both s...2076 days ago
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A guide for complete R beginners :- Getting data into R
...es there is the same number of data points in each column there is no header row (labels for the columns)...y of these are false, we need to tell that to the function If it has a header column mydata header=T als...3351 days ago
Awesome perl frameworks, libraries and software - PART 3
...o-FITS-HdrTrans - Perl module for performing astronomical metadata header translations from FITS to gen...ode freebsdgirl/ggautoblocker - Good Game Auto Blocker openresty/headers-more-nginx-module - Set...2488 days ago
Top-level pages
List of Bioinformatics Software Tools for Next Generation Sequencing
...es, PolyPhen predictions and clinical association. Input: Maq, gff, CASAVA, VCF, GATK bed, custom Output: “default output file format is a header line (starting with "#") foll...2902 days ago
Source Code and Pseudo Code !!
...ear as: Returns in functions should appear as: Function headers should appear as:...ions called with addresses should be written as: Function headers containing pointers should b...2652 days ago
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Wire posts
Bio-Scripts
Blast result parser with Perl and Bioperl
....."; my $in = Bio::SearchIO->new(-format => 'blast', -file => $infile); open (OUT,">$outfile") or die "Cannot open $outfile: $!"; # print the header info for tab-deliminated colu...2908 days ago
- #!/usr/bin/env perl # Usage: fastaRead.pl data.fa use strict; use warnings; my $filename = $ARGV[0]; my $sequence; open my $fileH, "
2908 days ago
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Comments
Comment on "Sibelia: A comparative genomics tool"
...This file contains input sequences represented as permutations of the synteny block. It has two lines for each input sequence: 1. Header line -- FASTA header of the sequence (starting wit...1278 days ago
Comment on "Mugsy: multiple whole genome alignment tool"
...mporary files during the run.The prefix of each input filename will be used as the genome name in the output files (eg. genome1 from genome1.fsa). Header lines in the FASTA files shou...1279 days ago
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