Results for "homologous"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...here have been various algorithms developed to identify the conserved homologous synteny blocks (HSB) amongst...species. It is intended to help scientists study and analyze synteny, homologous genes and other conserved ele...2609 days ago
Structural variation: the hidden genomic treasure
...nerated by several different mechanisms including non‐allelic homologous recombination, non‐homologous end‐joining and deoxyribonucl...ariants can arise by several mechanisms, including nonallelic homologous recombination (NAHR), nonhomo...2702 days ago
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Bookmarks
PhyloGrapher - Graph Visualization Tool
PhyloGrapher is a program designed to visualize and study evolutionary relationships within families of homologous genes or proteins (elements).PhyloGrapher is a drawing tool...2950 days ago
Comparative genomics educational material and papers bookmarks
Alignment of the porcine genome against seven other mammalian genomes (Supplementary Information) identified homologous synteny blocks (HSBs). Using porcine HSBs and stringent filtering...2733 days ago
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Top-level pages
- ...edict function. The function can often be inferred if a sequence of a homologous protein with known function c...70 %. 3D models can be obtained most easily if the 3D structure of a homologous protein is known (homology mo...
3946 days ago
List of In-silico Binding Site Prediction Tools
...e. If a sequence is submitted then Phyre is run to predict the structure. The structure is then ussed to search a structural library to identify homologous structures with bound ligands...3743 days ago
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Wire posts
News
Breaking chromosomes to study cancer !!!
...osomal translocations occur following double-strand breaks (DSBs) in DNA when a section of one chromosome is exchanged with that of another, non-homologous chromosome. These exchanges m...3578 days ago
Illumina to Acquire Pacific Biosciences for Approximately $1.2 Billion !
...ng platforms address the majority of sequencing applications optimally, select applications, such as de novo sequencing and sequencing of highly homologous regions of genomes, are bette...2010 days ago
Video
Bioinformatics -- Understanding of living systems through information science
...ngements, such as inversions, transpositions, and duplications, occur. The genome comparison system developed by the Sakakibara Lab calculates homologous sequences called anchors, whi...3916 days ago
Tags
CHSMiner: a GUI tool to identify chromosomal homologous segments
Background The identification of chromosomal homologous segments (CHS) within and between genomes is essential for comparative genomics. Various processes including insertion/deletion and inversion could cause the degeneration of CHSs. Results Here we present a Java software CHSMiner tha...Tags: CHSMiner, GUI, tool, identify, chromosomal, homologous, segments
2359 days ago
SiLiX: implements an ultra-efficient algorithm for the clustering of homologous sequences
The software package SiLiX implements an ultra-efficient algorithm for the clustering of homologous sequences, based on single transitive links (single linkage) with alignment coverage constraints. SiLiX adopts a graph-theoretical framework to interpret similarity pairs as edges of a networ...Tags: SiLiX, ultra-efficient, algorithm, clustering, homologous, sequences, Bacteria
1970 days ago
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Comments
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...gous genes: Identify the orthologous genes between the genomes using tools such as OrthoFinder or OrthoMCL. Orthologous genes are genes that are homologous and have a common ancestor, b...422 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Thanks for such an informative blog. I notice MCScan is missing. MCScan is an algorithm able to scan multiple genomes or subgenomes in order to identify putative homologous chromosomal regions, and align these regions using genes as anchors. More at http://www.ncbi.nlm.nih.gov/pubmed/222176003672 days ago
