Bioinformatics tools developed for Oxford Nanopore data analysis !
MinION is the only portable real-time device for DNA and RNA sequencing. Each consumable flow cell...2321 days ago
Basic command-line to run BLAST
The goal of this tutorial is to run you through a demonstrat...to play with. Grab some cow and human RefSeq proteins: wget ft...h.gov/refseq/H_sapiens/mRNA_Prot/human.1.protein.faa.gz This...w.1.protein.faa grep -c '^>' huma...blastp -query cow.small.faa -db human...2244 days ago
Popular bioinformatics educational resources !
Followings are the list of popular bioinformatics educational resources...Finland. Ornl.gov/sci/techresources/Human_Genome/education/education.sh...e for introductory information on the Human Genome Project. His.se/bioi...Resources in biochemical, molecular, cellu...2193 days ago
chromoMap-An R package for Interactive visualization and mapping of human chromosomes
chromoMap is an R package that provides interactive, configurable and elegant graphics visualization of the human...2141 days ago
List of motif discovery tools !
...teins. CASTp -- computed atlas of surface topography of prot...CSA -- The Catalytic Site Atlas To search for catalytic resi...drug compounds. HGPD -- Human Gene and Protein Database A...- Proteome-wide prediction of cell signaling interactions using s...1993 days ago
Understating pacbio reads name !
m140415_143853_42175_c100635972550000001823121909121417_s1_p0/553/3100_11230 0.99 24 └1┘└─────2─────┘└──3─┘└─────...= movie Time of Run Start (yymmdd_hhmmss) Instrument Serial Number SMRT Cell...1990 days ago
Useful links to therapy, disease, drug and drug-target network data:
Useful links to therapy, disease, drug and drug-target network data: DrugBank: a bioinform...arget Network: network data of 890 drugs and 394 target huma...ific.thomson.com/products/iddb/HOMIM: a knowledgebase of human...1434 days ago
10 NGS services companies around the globe !
The global NGS services market is expected to reach USD 13.1 bi...aliper Life Sciences, Improvision, Viacell Inc., ViaCord LLC, among many...es and products, as well as carry out human diagnostic services. The com...ng genomes, targeted (re)-sequencing, human...1259 days ago
List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Structural and Functional...nt cluster variations between human and mouse View AREs in the human transcriptome and study the c...ed gene lists and networks in human and mouse. CVTree -- A P...es of gene and transcripts in huma...CRM) predictions for both the human...677 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
1. *Nick Barton:* - The textbook "Evolution" by Nick Barton, with...1b. Sachidandam et al. 2001. A map of human genome sequence variation c...x traits: from polygenic to omnigenic. Cell 169: 1177-1186. Neutral Ev...t al. 2010. The Genetic Landscape of a Cell....677 days ago