Kevler: Reference-free variant discovery in large eukaryotic genomes
Welcome to kevlar, software for predicting de novo genetic variants without mapping reads to a refe...odel. More at https://kevlar.readthedocs.io/en/latest/ https://www.cell....1572 days ago
FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads
FastGT is a program package for whole-genome genotyping of genome variants directly from ra...d runs in Linux. FastGT uses a list of variant-specific k-mer pairs that are unique in human...1572 days ago
The Global Alliance for Genomics and Health (GA4GH)
The Global Alliance for Genomics and Health (GA4GH) is a policy-framing and technical stand...ards-setting organization, seeking to enable responsible genomic data sharing within a human...1561 days ago
netGO: R-Shiny package for network-integrated pathway enrichment analysis
netGO is an R/Shiny package for network-integrated pathway enrichment analysis.netGO provid...is results and related networks. Currently, netGO supports analysis for four species (Human...1557 days ago
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SeqMule: Automated human exome/genome variants detection
SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs the script line by line. Users can change the pipeline or fine-tune the parameters by modifying its configuration file.1551 days ago
U-Plot: Genome U-Plot sample implementation
The Genome U-Plot is a JavaScript tool to visualize Chromosomal abnormalities in the Human Genome using a U-shape layout.1537 days ago
HS3D: Homo Sapiens Splice Sites Dataset
HS3D (Homo Sapiens Splice Sites Dataset) is a data set of Homo Sapiens Exon, Intron and Spl...he complete GenBank (Primate Sequences Division) Rel.123 (162,557 entries), entries of Human...1436 days ago
Supernova: generates phased, whole-genome de novo assemblies from a Chromium-prepared library.
Supernova generates phased, whole-genome de novo assemblies from a Chromium-prepa...are allowed.• Please note that we have not extensively tested genomes larger than human...1448 days ago
RNA-Bloom: a fast and memory-efficient de novo transcript sequence assembler
RNA-Bloom is a fast and memory-efficient de novo transcript sequence assembler. It is designed for...ingle-end/paired-end bulk RNA-seq (strand-specific/agnostic) paired-end single-cell...1409 days ago