parallelLastz: Lastz with multi-threads support.
Running Lastz (https://github.com/lastz/lastz) in parallel mode. This program is for single...lastz program. This is useful when you lastz a big query file to a huge reference like human...1371 days ago
MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
The algorithm presented herein, Mining Algorithm for GenetIc Contr...ctors that drive gene changes in 4 settings: 1) A cell line expressing or lacking si...gle TF in a particular neuronal subtype 4) Single cell...1275 days ago
maftools : Summarize, Analyze and Visualize MAF Files
With advances in Cancer Genomics, Mutation Annotation Format (MAF) is bein...ly accepted and used to store somatic variants detected. The Cancer Genome Atlas Project has sequenced ov...1248 days ago
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Hifiasm is a fast haplotype-resolved de novo assembler for PacBio Hifi reads. It can assemble a human...1247 days ago
1217 days ago
IVA: accurate de novo assembly of RNA virus genomes
IVA (Iterative Virus Assembler) designed specifically for read pairs sequenced at highly va...epth from RNA virus samples. We tested IVA on datasets from 140 sequenced samples from human...1066 days ago
Calling variants in non-diploid systems
The main challenge associated with non-diploid variant calling is the difficulty in disting...equency variants. Some of the early attempts to do this well have been accomplished on human...1063 days ago
981 days ago
WAAFLE: a Workflow to Annotate Assemblies and Find LGT Events.
Lateral gene transfer (LGT) is an important mechanism for genome diversification in microbial communities, including the human...974 days ago
Peregrine & SHIMMER Genome Assembly Toolkit
Peregrine is a fast genome assembler for accurate long reads (length > 10kb, accuracy > 99%). It can assemble a human...890 days ago