1278 days ago
WAAFLE: a Workflow to Annotate Assemblies and Find LGT Events.
...tant mechanism for genome diversification in microbial communities, including the human microbiome. While methods exist to identify LGTs from sequenced isolate genomes, identifying LGTs from community metage...947 days ago
UniqueKmer: Generate unique KMERs for every contig in a FASTA file
...ntig. The output unique k-mer file and Genome file can be used for fastv: https://github.com/OpenGene/fastv, which is an ultra-fast tool to identify and visualize microbial seque...862 days ago
400 days ago
doubletrouble: identify duplicated genes from whole-genome protein sequences and classify
doubletrouble aims to identify duplicated genes from whole-genome protein sequences and classify them based on their modes of duplication. The duplication modes are i. segmental du...53 days ago