Results for "image processing"

Bio-Scripts

  • Commands to install conda in Ubuntu !

    jit@jit-HP-Pro-3335-MT:~/Downloads$ mkdir jittmp jit@jit-HP-Pro-3335-MT:~/Downloads$...... installing: idna-2.8-py37_0 ... installing: imagesize-1.1.0-py37_0 ... install...alling: h5py-2.9.0-py37h7918eee_0 ... installing: imageio-2....

    1508 days ago

  • Commands to install Statistics::R module in Ubuntu !

    $ sudo apt-get install libstatistics-r-perl Reading package lists... Done Buildin...up r-base (3.4.4-1ubuntu1) ... Setting up libstatistics-r-perl (0.24-1) ... Processing triggers for man-db (2.8.3-2u...

    1508 days ago

  • Setting up autoConTAMPR !

    (base) jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ docker build -t autocontampr . Sending build context to Docker daemon 9.024MB Step 1/16 : FROM ubuntu:14.04 --->...

    1439 days ago

  • Copy files from/to Docker

    #Find out a container’s name or ID using the docker ps command: $ docker ps CONTAINER ID IMAGE COMMAND CREATED STATUS PORTS NAMES 72ca2488b353 my_image...

    1437 days ago

  • Extract the sequence by IDs !

    #This method can be applied directly to FASTA or a FASTQ file, compressed or uncompressed files. Seqtk is a fast and lightweight tool for processing biological data (FASTA/FASTQ)...

    1399 days ago

  • Install prokka using conda !

    (JitMetaENV) ➜ assembly conda install -c bioconda prokka Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solv...

    1212 days ago

  • Install wgd cli on linux !

    (JitMetaENV) ➜ wgd git:(master) pip install --user ERROR: You must give at least...e "pip help install") (JitMetaENV) ➜ wgd git:(master) pip install --user . Processing /home/urbe/sahil_data/novoKor...

    1204 days ago

  • Install htop in elementary/Ubuntu OS !

    neelam@neelam-Lenovo-ideapad-320-15ISK:~$ sudo apt-get...top (2.1.0-3) ... Setting up htop (2.1.0-3) ... Processing triggers for desktop-file-uti...23-1ubuntu3.18.04.2+elementary2~ubuntu5.0.1) ... Processing triggers for bamfdaemon (0.5....

    1149 days ago

  • Set up WGD environment using conda !

    #Wgd cannot be installed directly with bioconda at present, so it is slightly troublesome to install, because it #depends on a lot of software. wgd depends on the followi...

    1200 days ago

  • Perl script to run awk inside perl

    #!/usr/local/bin/perl eval 'exec /usr/local/bin/perl -S $0 ${1+"$@"}' if $running_under_some_shell; # this emulates #! processing on NIH machines. # (remove #...

    1160 days ago