Software and Tools to detect structure variation with long reads !!
...iamentsv/ https://www.dnanexus.com/papers/Parliament_Info_Sheet.pdf PBHoney: the structural variation discovery tool PBHoney is an implementation of two variant-identification...2614 days ago
List of Research Institutes in India (Biological Sciences/ Biotechnology)
...l Centre for Antarctic and Ocean ResearchHeadland Sada, Vasco-da-Gama 403 804, GoaEmail: info@ncaor.orgResearch Areas: Co–ordination and implementation of the Indian Antarctic Progr...2370 days ago
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Master Thesis: Trans-membrane topology prediction through Markov based decoders
...dataset of 86 proteins with supervised topology. These results compare favorably with existing methods. Source Code: Matlab Conclusion/Implementation: Here discriminant data minin...3951 days ago
Bio++ : C Language libraries for your biological need
...mer down - it allows for easy implementation, it comes with a genuinely us...satisfied a need for a system implementation language efficient enough to...r inner storage, with several implementations. Support for alignments.Vari...n theory)Classes for matrices implementation.Linear algebra: eigen decompo...3954 days ago
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Structural polymorphism analysis from NGS data
...nomes of a same species and of the construction of pan- and core-genomes. These challenging tasks will require bioinformatics developments and implementation of methods for accommodating...3955 days ago
Clinical Genomics & Informatics Europe at Lisbon, Portugal
...nologies that have introduced significant challenges for bioinformatics, both in terms of the analysis and interpretation of data and clinical implementation of novel variants. Members of...3923 days ago
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Implementation of biological random mutation with Perl
#!/usr/bin/perl -w use strict; use warnings; #sequence for a better recognition my $DNA="AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA \ n"; my...2907 days ago
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U-Plot: Genome U-Plot sample implementation
The Genome U-Plot is a JavaScript tool to visualize Chromosomal abnormalities in the Human Genome using a U-shape layout.Tags: U-Plot, Genome, U-Plot, implementation, visualize
1530 days ago
odgi: optimized dynamic genome/graph implementation
odgi provides an efficient and succinct dynamic DNA sequence graph model, as well as a host of algorithms that allow the use of such graphs in bioinformatic analyses. Careful encoding of graph entities allows odgi to efficiently compute and transform pangenomes with mini...Tags: odgi, optimized, dynamic, genome, graph, implementation, genome, assembly, graph
829 days ago