Calling narrow and broad peaks from ChIP-Seq data
Know about the state-of-the-art algorithms implemented in Strand NGS for detecting the binding sites of transcription factor (narrow peaks) and enriched regions of histone modification...3209 days ago
Computer simulation of genetic mechanism !!
...rary preparation with parameter estimation http://bit.ly/rlsim-git Rmetasim Rmetasim is a front-end for the metasim engine that is implemented as a package that runs in the...2987 days ago
Bioinformatics Algorithm Demonstrations and Tutorials
Abstract This project presents demonstrations of selected computer science algorithms important in bioinformatics, implemented in the spreadsheet program Microsoft Excel. Spreadsh...3716 days ago
2632 days ago
Bio++ : C Language libraries for your biological need
...ver attempts to tie a programmer down - it allows for easy implementation, it comes with a genuinely useful standard library that can itself be implemented in C, and it is both efficien...3960 days ago
Genome Assembly Tools and Software - PART2 !!
...e being sequenced. PRICE 1.2 – de novo Genome AssemblerPRICE (Paired-Read Iterative Contig Extension) is a de novo genome assembler implemented in C++. Its name describes th...2698 days ago
3959 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...ng RNA-seq library preparation with parameter estimation http://bit.ly/rlsim-gitRmetasim Rmetasim is a front-end for the metasim engine that is implemented as a package that runs in the...3749 days ago
RNA-Seq Data Pathway and Gene-set Analysis Workflows
...DEseq/DEseq2, edgeR, limma and Cufflinks, and feed the results into GAGE/Pahview for pathway analysis or visualization. All these workflows are implemented in R/Bioconductor. The work...3845 days ago
BEReX : Biomedical Entity-Relation eXplorer
...etwork; expand the network by particular types of entities and relations; and modify the network by removing or adding selected nodes. BEReX is implemented as a stand-alone Java applica...3852 days ago
Marie Curie PhD position available immediately
...encing to characterise environmental adaptation. A single pipeline to analyse listerial transcriptomic and proteomic data will be developed and implemented by each partner for the sake...3311 days ago
MOPGA 2024 Visiting Fellowship Program for Early Career Researchers
...funded by the French Ministry for Europe and Foreign Affairs, in collaboration with the French Ministry for Higher Education and Research, and implemented by Campus France. The MOP...189 days ago
2138 days ago
Tadpole is 250x faster than SPADes assembler !
...flags. dot= Write a contigs connectivity graph (partially implemented) dump= Write kmers a...rocesscontigs=f Explore the contig connectivity graph. (partially implemented) Processing modes: mode=c...988 days ago
EFS: an ensemble feature selection tool implemented as R-package and web-application
The software EFS (Ensemble Feature Selection) makes use of multiple feature selection methods and combines their normalized outputs to a quantitative ensemble importance. Currently, eight different feature selection methods have been integrated in EFS, which can be used separately or combined in ...Tags: EFS, ensemble, feature, selection, tool, implemented, R-package, web, application, R
1571 days ago
Comment on "FRODOCK 2.0: fast protein–protein docking server"
A web applet for browsing protein-protein interactions was implemented. It enables the display of interaction relationships, based upon neighboring distance and biological function. Availability: The Java applet is available at http://www.charite.de/bioinformatics1395 days ago
2149 days ago