SeqKit - a cross-platform and ultrafast toolkit for FASTA/Q file manipulation
...these manipulations, and not particularly efficiently, and some are only available for certain operating systems. Furthermore, the complicated installation process of required packages...1930 days ago
LoFreq*: A sequence-quality aware, ultra-sensitive variant caller for NGS data
...ertainty), which are usually ignored by other methods or only used for filtering. https://github.com/CSB5/lofreq http://csb5.github.io/lofreq/installation/ https://github.com/CSB5/lof...1536 days ago
ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis
...scales from two organisms to every organism in UniProt. Please refer to the complete documentation at proteoclade.readthedocs.io for installation, a user's guide, and examples...1506 days ago
Dahak: benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
...ignment. We aim to deliver the analytical framework as a robust and reliable containerized workflow system, which will be free from dependency, installation, and execution problems typic...1485 days ago
1372 days ago
RosettaAntibodyDesign (RAbD): A general framework for computational antibody design
...https://www.rosettacommons.org/docs/latest/application_documentation/antibody/RosettaAntibodyDesign https://bio-jade.readthedocs.io/en/latest/installation.html...1321 days ago
SeqFu: A Suite of Utilities for the Robust and Reproducible Manipulation of Sequence Files
A general-purpose program to manipulate and parse information from FASTA/FASTQ files, supporting gzipped input files. Includes functions to interleave and d...794 days ago
604 days ago
pipesnake: bioinformatics best-practice analysis pipeline for phylogenomic reconstruction
...w, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It uses Docker/Singularity containers making installation trivial and results highly re...72 days ago