DendroPy: a Python library for phylogenetic computing
...performing some useful phylogenetic operations, such as data conversion and tree posterior distribution summarization, are also distributed and installed as part of the libary. Dendro...2208 days ago
2185 days ago
CBS Comparative Microbial Genomics group - BioTools download page
...omics. The package is a customized operating system, based on Xubuntu 10.10, available through the open source Ubuntu project. The system can be installed on a virtual computer, allowi...2086 days ago
2056 days ago
MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies
...d offers a wide range of different adaptive models (selective sweeps, polygenic adaptation, epistasis). MimicrEE2 runs on any computer with Java installed. It is distributed under the...2049 days ago
pyGenomeTracks: Standalone program and library to plot beautiful genome browser tracks
pyGenomeTracks aims to produce high-quality genome browser tracks that are highly customizable. Currently, it is possible to plot: bigwig bed (many options) bedgraph links (represented as arcs) Hi-C matrices (if HiCExplorer is installed)2007 days ago
shinyCircos: an R/Shiny application for interactive creation of Circos plot
shinyCircos, a graphical user interface for interactive creation of Circos plot. shinyCircos can be easily installed either on computers for personal use or on local or public servers...1553 days ago
1378 days ago
Introduction to phylogenies in R
...ical packages, such as ape, phangorn, phytools, and geiger. To get the most recent CRAN version of these packages, you will need to have R 3.3.x installed on your computer!939 days ago
SeqFu: A Suite of Utilities for the Robust and Reproducible Manipulation of Sequence Files
...ASTA/FASTQ files, also Gzip compressed A growing collection of handy utilities, also for quick inspection of the datasets Can be easily installed via conda: conda in...800 days ago