MFannot : a program for the annotation of mitochondrial and plastid genomes
...ation of mitochondrial and plastid genomes. It is a PERL wrapper around a set of diverse, external independent tools. It makes intense use of RNA/intron detection tools including&nbs...1716 days ago
HS3D: Homo Sapiens Splice Sites Dataset
...s Dataset) is a data set of Homo Sapiens Exon, Intron and Splice regions extracted...on have been selected, and 4523 exons and 3802 introns have been extracted from the...results, number of not GT starting / AG ending introns, minimum / maxim...1425 days ago
Frequent parameters for bioinformatics tools !
...30 ) & (( na FILTER ) | (FILTER = 'PASS')) & ( DP >= 20 ) & ( MQ >= 20 )" SNPeff ann (SNP detection) -nodownload -no-intron -no-downstream -no SPLICE_S...1288 days ago
Perl script to find coding regions in DNA sequences
...%.2f\n",$r; __END__ To test the program, save this two files in your current working directory: exon.fa and intron.fa. Both files contain the sequence of a real exon and intron, respectively. Extremely diff...2157 days ago
What Junk DNA? It’s an Operating System
The report adds to growing experimental support for the idea that all that extra stuff in the human genes, once referred to as “junk DNA,” is more than functionless, space-filling material that happens to make up nearly 98% of the genome. The paper adds to a growing body of knowledge ...Tags: Junk DNA, RNA, bioinformatics, sequencing, intron, granulocytes, splicing, gene expression
3914 days ago