MFannot : a program for the annotation of mitochondrial and plastid genomes
...ation of mitochondrial and plastid genomes. It is a PERL wrapper around a set of diverse, external independent tools. It makes intense use of RNA/intron detection tools including&nbs...1728 days ago
HS3D: Homo Sapiens Splice Sites Dataset
...s Dataset) is a data set of Homo Sapiens Exon, Intron and Splice regions extracted...on have been selected, and 4523 exons and 3802 introns have been extracted from the...results, number of not GT starting / AG ending introns, minimum / maxim...1437 days ago
Frequent parameters for bioinformatics tools !
...30 ) & (( na FILTER ) | (FILTER = 'PASS')) & ( DP >= 20 ) & ( MQ >= 20 )" SNPeff ann (SNP detection) -nodownload -no-intron -no-downstream -no SPLICE_S...1300 days ago
Perl script to find coding regions in DNA sequences
...%.2f\n",$r; __END__ To test the program, save this two files in your current working directory: exon.fa and intron.fa. Both files contain the sequence of a real exon and intron, respectively. Extremely diff...2169 days ago