Results for "isolate"
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shovill: Assemble bacterial isolate genomes from Illumina paired-end reads
Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also s...1227 days ago
- ...r errors and uncalled bases. The assembler reads two files in FASTQ format with quality information. If amplification primers were used (e.g., to isolate a variable region of the 16S...
2667 days ago
- ...allow hundreds or thousands of metagenome-assembled genomes (MAGs) to be obtained directly from environmental samples. It can also be applied to isolate and single-cell genomes. The...
2092 days ago
- ...-------------------------------------------------------------- tax_id: the unique identifier provided by NCBI Taxonomy for the species or strain/isolate GeneID: the unique identifie...
1949 days ago
WAAFLE: a Workflow to Annotate Assemblies and Find LGT Events.
...echanism for genome diversification in microbial communities, including the human microbiome. While methods exist to identify LGTs from sequenced isolate genomes, identifying LGTs fro...963 days ago
Monkeypox virus isolate MPXV_USA_2022_MA001, complete genome
LOCUS ON563414 197205 bp DNA linear VRL 30-MAY-2022 DEFINITION Monkeypox virus isolate MPXV_USA_2022_MA001, complete genome. ACCESSION ON563414 VERSI...657 days ago
