genoPlotR - plot gene and genome maps project!
...maps. It allows the user to read from usual format such as protein table files and blast results, as well as home-made tabular files. Features Linear representation of several seg...1972 days ago
Synteny and Rearrangement Identifier (SyRI)
...aligned using whole-genome alignment tools, and these alignments are then used as input to SyRI. SyRI identifies syntenic path (longest set of co-linear regions), structural rearrang...1462 days ago
SynVisio: An Interactive Multiscale Synteny Visualization Tool for McScanX.
...of McScanX a popular synteny and collinearity detection toolkit and gene...as an input for a McScanX query. The collinearity file generated as an...different types of visualizations such as Linear Parallel plots, Hive plo...1437 days ago
SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis
...res as suggested in [McMurdie and Holmes 2014] and [Jonsson2016]. SHAMAN robustly identifies the differential abundant genera with the Generalized Linear Model implemented in DESeq2 [...1358 days ago
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Monkeypox virus isolate MPXV_USA_2022_MA001, complete genome
LOCUS ON563414 197205 bp DNA linear VRL 30-MAY-2022 DEFINITION Monkeypox virus isolate MPXV_USA_2022_MA001, complete genome. ACCESSION ON563414 VERSI...650 days ago
Collection of Graph Visualization tools !
Standard approaches to genome inference and analysis relate sequences to a single linear reference genome. This is efficient but has a fundamental problem: Differences from this refer...467 days ago
JBrowse 2: a modular genome browser with views of synteny and structural variation
...jb2-web - stock instance of jbrowse-web v1.7.5 jb1 - stock instance of jbrowse 1 v1.16.11 jb2 embedded - a create-react-app with @jbrowse/react-linear-genome-view...377 days ago
CGView.js is a Circular Genome Viewing tool
...w. CGView.js is the genome viewer of Proksee, an expert system for genome assembly, annotation and visualization. Features Circular and linear views of genomes Capable...40 days ago