Results for "list"
Bio-Scripts
...Perl::OSType Module::Metadata Statistics::Lite Tie::Autotie Tie::IxHash Log::Log4perl FindBin::Real Getopt::Long Catalyst::Runtime Catalyst::Devel List::Util Test::XML::Simple Test:...2145 days ago
R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-project.org...1102 days ago
Extract a random sequence from a file
#!/usr/local/bin/perl -w use strict; use warnings; use autodie; use List::Util qw/ shuffle /; my $outputfile = 'randomoutput.txt'; open my $in_fh, '', $outputfile;...2915 days ago
Perl script to extract fasta sequence by matching name/ids !!
...s; use Text::Trim qw(trim); #Usage perl extractSeqbyID.pl ids.txt seq.fasta Result.fasta $ARGV[2] or die "use extractSeqbyID.pl LIST FASTA OUT\n"; my $list = shift @ARGV; my $fasta = s...2875 days ago
Install ATOM editor on Elemantory OS / Ubuntu
...l ./atom-amd64.deb [sudo] password for bioqueen: Reading package lists... Done Building dependency...enable, erase, featured, home, i, init, install, link, linked, links, list, ln, lns, login, ls, ope...1176 days ago
Extract fasta sequence from a multifasta file with fasta header Ids
...trict; use warnings; #Usage: perl my $list = shift @ARGV; my $fasta = s...V; my $out = shift @ARGV; my %select; open LIST, "$list" or die; while () {...p; s/>//g; $select{$_} = 1; } close LIST; $/ = "\n>"; open OUT, ">...2519 days ago
Genetic Algorithms demonstration with word DNA in Perl
...($dna); my $fitness = 0; # start with 0 fitness my $max_entry_length = 20; # longest word we accept # you can use any word list at the end of the program...2372 days ago
Plot the clock using Lastz -gerenal outfile
use strict; use warnings; use Statistics::R ; use List::Util qw(sum); #Usage perl clockPlot.pl Palindrome.palfc 1500 my $R = Statistics::R->new() ; $R->startR ; my $fileN...2299 days ago
Perl script to extract the uniq Ids
#!/usr/bin/perl -w use strict; use warnings; use List::Uniq ':all'; open(my $val, "2239 days ago
Installing Busco version 4.0.6
...-0.4224-pl526_3 perl-module-corel~ bioconda/linux-64::perl-module-corelist-5.20190524-pl526_0 perl-mo...stype bioconda/linux-64::perl-perl-ostype-1.010-pl526_1 perl-scalar-list-~ bioconda/linux-64::perl-sca...1453 days ago
