2141 days ago
2140 days ago
Bash oneliner to extract all ids from a multifasta file
#List of ids - one per line in allIds.txt $ awk 'BEGIN{while((getline0)l[">"$1]=1}/^>/{f=!l[$1]}f' seq.fa # You can play with this f=!l[$1 ] if wanted to extract or not extract the ids1552 days ago
Install Parrot Virtual Machine !
...abilities.........................yes. auto::platform - Generate a list of platform object files..................................done. gen::core_pmcs - Generate core pmc list.............................d...1551 days ago
1530 days ago
2089 days ago
Generates a genome coverage plot with R
library(CoverageView) ##draw a coverage plot for a test case BAM file #get a BAM test file treatBAMfile2069 days ago
Installing pb-assembly on Linux !
...ges) (denovo_asm) [jnarayan@hmem00 ~]$ conda list # packages in environment at...ults Warning: 'defaults' already in 'channels' list, moving to the top (denovo_a...gen_gfa_v1.py fc_coords2hp.py fc-list fc_quiv...2048 days ago
2017 days ago
Bash commandline to install Anaconda !
#The line begins with $ are the commands $ mkdir tmp $ cd tmp/ $ curl -O https://repo.anaconda.com/archive/Anaconda3-2019.03-Linux-x86_64.sh % Total %...1569 days ago