Results for "local"
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...a genetic map. Chromonomer tries very hard to identify and remove markers that are out of order in the genetic map, when considered against their local assembly order; and to identi...1539 days ago
SvABA: Structural variation and indel detection by local assembly
SvABA is a method for detecting structural variants in sequencing data using genome-wide local assembly. Under the hood, SvABA uses a custom implementation of SGA (String G...1517 days ago
NucDiff: In-depth characterization and annotation of differences between two sets of DNA sequences
...fferences between two closely related nucleotide sequences. It is able to deal with very fragmented genomes, structural rearrangements and various local differences. These features m...1461 days ago
Synteny and Rearrangement Identifier (SyRI)
...SyRI. SyRI identifies syntenic path (longest set of co-linear regions), structural rearrangements (inversions, translocations, and duplications), local variations (SNPs, indels, CNV...1461 days ago
pggb: the pangenome graph builder
...ph (in the variation graph model). Its goal is to build a graph that is locally directed and acyclic while preserving large-scale variation. Maintaining local linearity is important for th...1329 days ago
vsFilt: A tool to improve virtual screening by structural filtration of docking poses
...igand poses. The results are web-based and can be operated on-line using the built-in HTML5 interactive analysis tools, or can be downloaded for a local use. The vsFilt is freely ava...1257 days ago
Genomic Open-source Breeding informatics initiative
...eir routine breeding programs. To transform breeding by connecting diverse data with precision breeding tools to advance yields and adaptation to local growing conditions, bringing...1214 days ago
odgi: optimized dynamic genome/graph implementation
...nd the target node id, where the node id corresponds to the rank in the global array of nodes. Graphs built from biological data sets tend to have local partial order and, when sorte...823 days ago
- ...tions of the clusters. Clustering Workbench clusters content from local files in JSON or Excel format...abstracts of medical papers from the PubMed database provided by NCBI. Local file: content read from...
394 days ago
