Pack a perl program with their dependencies on Ubuntu !
...Jit@jit.aber SvABA: Structural variation and indel detection by local assemblyBy Jit 6 days ago SvABAStructuralvariationindeldetectionlocalassembly github.com -...1508 days ago
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Perl script to run awk inside perl
#!/usr/local/bin/perl eval 'exec /usr/local/bin/perl -S $0 ${1+"$@"}' if $running_under_some_shell; # this emulates #! processing on NIH machines. # (remove #! line above if indigesti...1160 days ago
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Perl script to rename the fasta file !
#Script #1 #!/usr/bin/perl -w use strict; #USAGE #perl extractPattern.pl kmerfasta > uniref100_result_broad my %kHash; local $/ = '>'; my $infile2 = "$ARGV[0]"; # Kmer fasta open( FH2, '854 days ago
Script to rapid genome clustering based on pairwise ANI
...n -query -db -outfmt '6 std qlen slen' -max_target_seqs 10000 -perc_identity 90 -o -num_threads 32 Next, calculate pairwise ANI by combining local alignments between sequence p...632 days ago