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About me: .../pubmed.ncbi.nlm.nih.gov/?term=Narayan+Jitendra Github @ https://github.com/jnarayan81 PhD thesis @ British Library https://ethos.bl.uk/OrderDetails.do;jsessionid=E6D7E9292B1198B...25 days ago
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3761 days ago
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Blogs
Five unique traits of effective computational biologist
...not only good programmer but also expert in biological stuff....mmers learn new technical skills proactively. But great biolog...great biological programmer also read about the BioPerl packa...programming — you must also be excited about your resear...3965 days ago
How to install Perl modules manually, using CPAN command, and other quick ways
...k [y/N]: yDownloading Packages:(1/5): perl-ExtUtils-ParseXS-2.18-31.fc9.i386.rpm&...B 00:00(4/5): perl-ExtUtils-MakeMaker-6.36-31.fc9.i386.rp...tput will be like as follows: bioperl - Perl tools for computational molecular b...3965 days ago
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Bookmarks
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3960 days ago
- Bioinformatics is developing very rapidly. With new tools and software it is, now a days, easy to analyse the large scale genomics datasets. But we need to understand the background...
3960 days ago
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Files
Regular Expression Cheat Sheet
...at sheet, hence write our own cheat sheet. The Regular Expressions Cheat Sheet, a quick reference guide for regular expressions, including symbols, ranges, grouping, assertions...3967 days ago
Bioinformatics approach to Boar Taint
...raditional solution to remove boar taint but it also results in bad quality of me...lection of male pigs with reduced boar taint levels. Resequencing of a total of 4...aplotypes in close linkage disequilibrium with QTLs and fine mapping of QTLs thro...3804 days ago
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Discussion topics
Which are the best statistical programming languages to study for a bioinformatician?
...PSS, R and several Bioconductor packages. Matlab had a lot of powerful tools and was easy to use, whereas SPSS is for non-programmers and R need programming skills. I am wondering what other pe...3966 days ago
- ...a.org/wiki/Compression_of_Genomic_Re-Sequencing_Data http://www.nature.com/nbt/journal/v30/n7/full/nbt.2241.html http://bioinformatics.oxfordjournals.org/content/29/13/i283.full...
3935 days ago
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Pages
Bio++ : C Language libraries for your biological need
...ually largely written in C itself. Also, C allowed programmers to (w...as follows: Support for codon models (including non-homogenous mod...lue computations. Substitution models JC, K80, T92, F84, HKY85, TN...l J, Boussau B. Non-homogeneous models of sequence evolution in the...3962 days ago
- ...ms, including functional, object oriented, imperative and reflective. It also has a dynamic typesystem and...onRuby, JRuby and MacRuby providing just-in-time compilation and MacRuby also providing ahead-of-time comp...
3962 days ago
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Top-level pages
- ...plication of computational tools and approaches for expanding...red in the genetic code, but also experimental results from va...ence data are prominent, but also other data are stored, e. g....ein function can be obtained also by force–field based a...
3962 days ago
- ...gies, the main challenge is to cope with the analysis of vast production of sequencing database through advanced bioinformatics tools. In oder to develope sotware/tools bioinformatician/ biological...
3962 days ago
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Wire posts
News
- ...who want to learn Python. The google python class includes written materials, lecture videos, and lots of code exercises to practice Python coding. These materials are used within Google to int...
3966 days ago
Bioinformatics: Introduction to PERL
...simple Perl programs and to understand more complex Perl programs written by others. The course will be taught using the online Learning Perl materials created by Sofia Robb of the...3966 days ago
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Opportunity posts
- ...at prepare them optimally for their research, a research seminar where they can meet internationally renowned researchers in the field, and soft skills and language courses. Requ...
3962 days ago
Postdoctoral position in bioinformatics @ Sweden
...arch, normally as a member of a research group. Included in your work is also to take part in supervision...tudents and M.Sc thesis students. Teaching of undergraduate students may also be included to a small exten...3962 days ago
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ResearchLabs posts
Donnelly Centre of Cellular & Biomolecular Research (CCBR), Bader Lab
...ion Detection of cell type and stage active biological processes using molecular profiles Biological pathway and network databases and analysis tools Link @ http://baderlab.org...3963 days ago
- ...visae) to environmental stresses triggered by oxidative agents, heavy metals, or drastic changes in nutrie...which are processed, archived, integrated and represented as working models through bioinformatics and ma...
3934 days ago
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Fun
Perl Poem: Parse it in both Perl and English!
...Winter 1992 Technical Conference, entitled "Camels and Needles: Computer Poetry...es being the most prolific Perl poet, Sharon is also the most widely published, h...me if-you-please; sort your feelings, reset goals, seek (friends, family, anyon...3933 days ago
Bioinformatician special skills !!
Bioinformatician and Computational biologist are the only programmers on Earth who can explain multiplication and division are the same. Pretty codes for them ......3910 days ago
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Video
Bioinformatics -- Understanding of living systems through information science
...from information science are not just used as tools to advance life science resea...ve developed software called Murasaki, which we also use to analyze large genomes...ble us, for example, to predict whether individuals are susceptible to cancer, or...3932 days ago
Computer Theory & Genetics: George Chao at TEDxUMNSalon
...learn from genetic data. He would like to go into a career of research into the application of bioinformatics in various fields. ---- The individuals involved with TEDxUMN have a...3930 days ago
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Bio-Scripts
- #!/usr/bin/perl use strict; use warnings; #assign strings to variables my $DNA = "GATTACACAT"; my $polyA = "AAAA"; #concatenate two strings my $modifiedDNA...
2932 days ago
- ...everse complement of $DNA is $rcDNA\n"; #look for a start codon in the reverse sequence if($rcDNA =~ /ATG/){ print "Start codon found\n"; } else{ print "Start codon not fo...
2932 days ago
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Polls
Which of the following programming language is best for a bioinformatics beginner?
...will be doing NGS in the course of my research work and I will like to learn a programming language which is compatible with most bioinformatics tools or software. I basically want...3545 days ago
Which of the followings are the best place to study Bioinformatics ?
...losion in biological data has resulted from genome projects, next generation sequencing and other 'omics' techniques. Bioinformatics provides the tools to analyse and exploit such d...3431 days ago
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Tryst
Tryst with a Bioinformatician # Dr Altan Kara
...iological problem and by using bioinformatics tools this can be easily achieved.&...selected from the panel. Is there anything else we should know about you and...the packages it provides, it is open source and also open for development. As a r...2377 days ago
Groups
...popularity has increased substantially in recent years with the availability of huge genomic data and biological packages. Bioconductor provides tools for the analysis and comprehe...3966 days ago
Next Generation Sequencing (NGS)
...ing is almost one of the most popular technique scientific fraternity pursue worldwide to comprehand the genomic complexity of all the organism and also used to reveal genetic facto...3922 days ago
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Tags
Comments
Comment on "Benchmarking Perl Module !"
...ou want to benchmark. Here's an example of a benchmark subroutine that calls a function from a hypothetica...ule to other modules or to previous versions of your own module. You can also use other functions from the...430 days ago
Comment on "Short-read assembly using Spades !"
...ses. This step can be performed using various tools such as Trimmomatic or FastQC...the assembled genome. This can be done using tools such as QUAST or BUSCO. These...parameters used for SPAdes and the evaluation tools may vary depending on the spe...430 days ago
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