Results for "manner"
Bookmarks
Bioinformatics Algorithm Demonstrations and Tutorials
...preadsheets provide an interesting platform for demonstration of algorithms, since various steps of the calculations can be exposed in a manner that is easily comprehensible...3702 days ago
- You are requested to please bookmark collection of bioinformatics tools, scripts, codes that can be pieced together in a very easy and flexible manner to perform both simple and compl...
3232 days ago
- ...hood Evaluation (ALE) framework that overcomes these limitations, systematically evaluating the accuracy of an assembly in a reference-independent manner using rigorous statistical me...
2929 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
...ferences arising from insertions, deletions or from rearrangement events. Computational tools that can visualize genome alignments in a meaningful manner are needed to help researcher...2662 days ago
- ...is stored in the form of Mutation Annotation Format. This package attempts to summarize, analyze, annotate and visualize MAF files in an efficient manner either from TCGA sources or a...
2632 days ago
- ...with its own set of opportunities and pitfalls in the finishing process. While genomes can now be sequenced to high redundancy in a cost-effective manner, the process of assembling th...
2539 days ago
RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
...irst identify cases where both types of classifier are in agreement, which constitute the highest-confidence set. Sequences not classified in this manner are subjected to a series of...2349 days ago
gSearch: a fast and flexible general search tool for whole-genome sequencing
gSearch compares sequence variants in the Genome Variation Format (GVF) or Variant Call Format (VCF) with a pre-compiled annotation or with variants in other genomes. Its search algorithms are subsequently optimized and implemented in a multi-threaded manner.2096 days ago
Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads
...strategy to divide potential groups into haplotypes in a top–down manner. And along a guided tree, it iteratively merges sibling leaves in a bottom–up manner if they are similar enough. H...2023 days ago
wgd—simple command line tools for the analysis of ancient whole-genome duplications
...analysis workflows together with tools for modeling and visualization, rendering these analyses accessible to genomics researchers in a convenient manner. https://academic.oup.com/bi...1380 days ago
