Results for "mapped"
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Integrative Genomics Viewer (IGV) tutorial
...llows you to view several types of data files involved in any NGS analysis that employs a reference genome, including how reads from a dataset are mapped, gene annotations, and predic...3582 days ago
Simons Genome Diversity Project
...diverse human populations All genomes in the dataset were sequenced to at least 30x coverage using Illumina technology. The sequencing reads were mapped and genotyped using a customi...1090 days ago
REAPR: a universal tool for genome assembly evaluation
...luates the accuracy of a genome assembly using mapped paired end reads, without the...t an assembly in FASTA format and paired reads mapped to the assembly in a BAM file...locate mis-assemblies. REAPR works best using mapped read pairs from a large inser...2948 days ago
- ...chosen/set. Using BBMap Mapping Nanopore reads BBMap.sh has a length cap of 6kbp. Reads longer than this will be broken into 6kbp pieces and mapped independently. More at https...
2762 days ago
Many-Core Engine (MCE) for Perl example
...with the distribution. MCE::Examples Describes various demonstrations for MCE including a Monte Carlo simulation. MCE::Subs Exports functions mapped directly to MCE methods; e.g....2649 days ago
- The hive plot is a rational visualization method for drawing networks. Nodes are mapped to and positioned on radially distributed linear axes — this mapping is based o...
2632 days ago
splitbam: splits a BAM by chromosomes
...ROM__/__CHROM__.bam -R ref.fasta (bam|sam|stdin) Options -h help; This screen. -R (indexed reference file) REQUIRED. -u (unmapped chromosome name): default:Unmapped -e | --empty : generate EMPT...2620 days ago
AIRVF: a filtering toolbox for precise variant calling in Ion Torrent sequencing
AIRVF that works on flowgram, raw and mapped reads and called variants to reduce artifact-driven false variant calls. Tests on sequencing data of standard reference material showed up...2324 days ago
Seal: SEquence ALignment evaluation suite
...through a standardized interface. Parsing the output of the alignment tool and calculating the number of reads that were correctly or incorrectly mapped. Computing run times and mea...2312 days ago
- Manta calls structural variants (SVs) and indels from mapped paired-end sequencing reads. It is optimized for analysis of germline variation in small sets of individuals and somatic v...
2166 days ago
