CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
...nd (highly) unknown microorganisms, as generated by contemporary metagenomics studies. The core algorithm of both programs involves gene calling, mapping of predicted ORFs against the...1462 days ago
SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
...res several unique characteristics: Co-assembly procedure with read mapping for estimation of the abundan..., allowing to spot potential chimeras. Metatranscriptomic support via mapping of cDNA reads against referen...1371 days ago
URMAP, an ultra-fast read mapper
URMAP, a new read mapping algorithm. URMAP is an order of magnitude faster than BWA with comparable accuracy on several validation tests. On a Genome in a Bottle (GIAB) variant...1297 days ago
CoverM: Read coverage calculator for metagenomics
...ulates coverage of genomes/MAGs coverm genome (help) or individual contigs coverm contig (help). Calculating coverage by read mapping, its input can either be BAM...1115 days ago
Kmer: a suite of tools for DNA sequence analysis
More at https://help.rc.ufl.edu/doc/Kmer This also includes: A2Amapper: ATAC, Assembly to Assembly Comparision tool: Comparative mapping between two genome assemblies (sam...1005 days ago
976 days ago
851 days ago
Creating Genetic Maps from GBS data
...nts and examining their progenies. These kinds of crosses to create specific group of individuals of known ancestry is called as mapping population. Many types of mapping population exist. Here we wil...254 days ago