Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo a...on sequencer reads, aligned to whole chromosomes of model organism or mammalian genomes...of the Vancouver Short Read Analysis Package MACS - Model-based Analysis for ChIP-Seq....3512 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo...on sequencer reads, aligned to whole chromosomes of model organism or mammalian genomes...the Vancouver Short Read Analysis Package * MACS - Model-based Analysis for ChIP-Seq....3235 days ago
Binding Site Prediction in Protein !
The interaction between proteins and other molecules is fu...protein-structure prediction to provide structural models of the binding site. Ligands bound to structures are superimposed onto the model and use to predict the bindin...2195 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers man...Description: uses likelihood-based model for variant calling, starts f...bilisticallys instead of using ad-hoc modeling; effects are integrated at...put: covariance matrix for regression models mtSet Description: C...2901 days ago
Genome Assembly Tools and Software - PART1 !!
...two categories: string-based model and graph-based model. We therefore list many geno...ly correspond the Clotho data model. Beyond database access and d...obust general time reversible model with gamma and invariant rate...ion Unit Assembly by a Hidden Markov model TruHmm is a referen...2678 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. major/MySQLTune...l script for waking up computers via Wake-On-LAN magic packets dod38fr/config-model - Perl module to create...2482 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...NGS-MC Phylogeny of species based on NGS reads using alignment-free sequence dissimilarity measures d2* and d2 S under different Markov chain models (using k-words) R pack...2364 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late...are https://github.com/diazlab/SCell Beta-Poisson model for single-cell RNA-seq data...ltext/S1534-5807(16)30682-7 Scalable latent-factor models applied to single-cell RNA-s...2343 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED dat...AKER's inputs are minimal and its ouputs can be directly loaded into a Generic Model Organism Database (GMOD). The...2324 days ago
Bioinformatics Web Application Development with Perl
Perl's second wave of adoption came from the growth of t...ring high-scalability, event-based request handling models. Dancer The Dancer&nb...your code, leaving you to manipulate your business models instead of the small details...2314 days ago