Converting a VCF into a FASTA given some reference !
Samtools/BCFtools (Heng Li) provides a Perl script vcfutils.pl which does this, the funct...utput.fastq> https://github.com/gringer/bioinfscripts/blob/master/vcf2fq.pl https://github.com/lh3/samtools/blob/master/bcftool...2126 days ago
List of motif discovery tools !
In genetics, a sequence motif is a nucleotide or amin...ylation sites in proteins. PhosphoSite -- A bioinformatics resource dedicated to physiol...wiss EMBnet node web server Use a collection of bioinformatics tools at this portal site....2003 days ago
Thank You Email After Bioinformatics Interview !
A good interview thank you email or note should contain three essential pieces: a) Show appreciation for their time and thank them b) Mention something specific you talke...1861 days ago
Understanding reads mapping and flags !
Linear Alignment: An alignment of a read to a single reference sequence that may include insertions, deletions, skips and clipping, but may not include direc...1847 days ago
Introduction to Bioinformatics
Introduction to bioinformatics is a course for biologists and clinicians that would like to learn more about the way bioinformatics is used in healthcare, biotec...p;https://edu.t-bio.info/course/introduction-bioinformatics/1806 days ago
New Machine Learning Packages in R
Machine Learning autokeras v1.0.1: Implements an interface to AutoKeras, an open source software library for automated machine learning. See README for...1510 days ago
Useful links to therapy, disease, drug and drug-target network data:
Useful links to therapy, disease, drug and drug-target network data: DrugBank: a bioinformatics- cheminformatics resource com...1444 days ago
Software for genome assembly !
List of bioinformatics tools/Software Website References for genome assembly: 1 Falcon https://github.com/PacificBiosciences/pb-assembly 2 Canu assembler http://canu.rea...1354 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling evaluation for...ww.pacb.com/blog/young-investigators-share-stellar-science-career-advice-and-bioinformatics-tools-at-smrt-leiden-2021/ &...1002 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the de novo a...ntrol:Check the qualiy with fastQC.Scripthttps://bioinformaticsonline.com/snippets/view/42540...other contaminants from the reads.Scripthttps://bioinformaticsonline.com/snippets/view/42542...1214 days ago