Results for "matches"
Top-level pages
...to different basical principles. Recursive or iterative A recursive algorithm is one that calls itself repeatedly until a certain condition matches. It is a method common to fun...3953 days ago
Perl one-liner for bioinformatician !!!
..."%-5d %s", $., $_ if /regex/' #Left align lines with 5 white spaces if matches a pattern (perl -ne 'printf "...++ if /regex/; END {print $a+0}' #print the total number of lines that matches the patternperl -alne 'print...3635 days ago
Commercial and public next-gen-seq (NGS) software
...lignment search, guaranteeing to find epsilon-matches between two sequences; SWIFT...ired. SeqMap - Supports up to 5 or more bp mismatches/INDELs. Highly tunable. Writt...made to increase the accuracy with duplicate matches. Open source, creates viewabl...3526 days ago
Software packages for next gen sequence analysis
...rmatics). POSIX OS required. * SeqMap - Supports up to 5 or more bp mismatches/INDELs. Highly tunable. Writt...ignment by Hashing Algorithm) is a tool for rapidly finding near exact matches in DNA or protein databases u...3249 days ago
Awesome perl frameworks, libraries and software - PART 1
...bsp;- Social scraper is a Perl program that scrapes reddit, digg, stumbleupon, delicious, furl, flickr, simpy, boingboing, wired for content that matches the given patterns. metomi/f...2496 days ago
Converting BLAST output into CSV
Suppose we wanted to do something with all this BLAST output. Generally, that’s the case - you want to retrieve all matches, or do a reciprocal BLAST, or something. As with mos...2344 days ago
PerlOneLiner for Bioinformatician
...l -ne '!/regex/ && print' # Print the line before a line that matches a regular expressionperl -ne...amp;& print $last; $last = $_' # Print the line after a line that matches a regular expressionperl -ne...2309 days ago
Awk for Bioinformatician and computational biologist
...reads the input files one line at a time.For each line, it matches with given pattern in the given order, if matches performs the corresponding ac...CTTATATATATATAcontig5 ACTTTATATATT We print the line which matches the pattern contig3 $ awk '/...2286 days ago
Understanding BLASTn output format 6 !
...d 3. pident percentage of identical matches 4. length alignment length 5. mismatch number of mismatches 6. gapopen number o...nment lengthpident Percentage of identical matchesnident Number of identical...2145 days ago
