The DNA of a Successful Bioinformatician decoded !!!
Many blogs exist about successful bioinformatician, but this blog so far now is my pers...team to achieve its targets, 'cause some of my team mates probably didn't finish! (at l...e us. It's important to treat all the research team mates...3759 days ago
Computer simulation of genetic mechanism !!
Computer simulation is the discipline of designing a mode...m A tool to generate collections of synthetic reads that reflect the diverse taxo.../ pIRS Profile-based Illumina pair-end reads simulator https://code.google...3027 days ago
Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
We demonstrate a novel approach forlocal alignment of DNA reads with respect to reference genome.For this process we have used Skip-gram model for creatingencoding(Nucl2Vec) and k-nearest neighbor...1198 days ago
Comparison of Short Read De Novo Alignment Algorithms
Excellent article to introduce different sequencing methods along with tools for de novo assembly of sequencing reads and their relevant references. Title: Comparison of Short Read De Novo Alignment Algorithms Author: Nikhil Gopal3962 days ago
Bioinformatics approach to Boar Taint
Meat products obtained from intact male pigs often produce offensive smell or odour w...taint levels were done in Illumina HiSeq2000 to >10X average coverage. Short reads generated from these samples...3842 days ago
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Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value a...xpression levels from RNA-Seq reads. MaLTA – Transcriptome...ose contigs can be individual reads from a subset of the paired-r...ended for Illumina sequencing reads. Quake adopts the k-mer error...2738 days ago
Awesome perl frameworks, libraries and software - PART 4
tjstein/php5-fpm-munin-plugins - A set of Munin pl...chetop is a console-based tool for monitoring the threads and overall performance of a...put-nginx-module - This is a nginx module that reads HTTP POST and PUT request bod...2546 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...FASTX-toolkit: FASTQ/A short-reads pre-processing tools Home Pag...n FM-index of the 1.2 billion reads] Readjoiner: a fast and memo...roving RNA-Seq expression estimates by correcting for fragment bi...sis of the resulting sequence reads.] Genotyping by sequencing...3832 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with b...MetaSim A tool to generate collections of synthetic reads that reflect the diverse taxo...it.ly/rlsim-gitpIRS Profile-based Illumina pair-end reads simulator https://code.google...3789 days ago
Illumina reveals first dataset of long reads
With the help of Moleculo technology , acquired by Illumina releases new service for long reads sequencing i.e., FastTrack Long Reads. Average read length is arou...eck following pages for publications on long reads and more: http://www.illumin...3960 days ago
RNA-Seq Data Pathway and Gene-set Analysis Workflows
It describe the GAGE (Luo et al., 2009) /Pahview (Luo and Brouwer, 2013) workflows on...e-set Analysis Workflows“. First cover a full workflow from preparation, reads counting, data preprocessing,...3885 days ago
Research Fellow @ Mendel laboratory
IRCCS Casa Sollievo della Sofferenza – Mendel laboratory is seeking one talented bioi..., RNA-Seq and miRNA-Seq data. Main activities will be: (i) data analysis (short-reads mapping, variants call and an...3866 days ago
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Genetics, epigenetics and disease
Royal Society GlaxoSmithKline Prize Lecture given by Professor Adrian Bird CBE FMedSc...the autism spectrum disorder Rett syndrome is caused by loss of a protein that reads methylated CG and affects the...3925 days ago
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Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a...informatics tools or software. I basically want to do de-novo assembly, map reads, align reads, and expression analysis. Rec...3583 days ago
error: mate does not occur next to it in your BAM file. How to fix it ?
*****WARNING: Query v300043428L4C001R0481272249 is marked as paired, but its mate does not occur next to it in your BAM file. Skipping.Tags: samtools, paired, pe, error, mates reads
1516 days ago