Computer simulation of genetic mechanism !!
...l to generate data of related sequences along a given phylogeny, taking into account user defined system of neighbourhoods and instantaneous rate matrices. http://www.cibiv.at/software...2988 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
...ting very large grids. Input parameters' arguments may be specified in separate files. This is particularly convenient when specifying large matrices. Many adjustments have b...2786 days ago
2476 days ago
Bio++ : C Language libraries for your biological need
...entries. Phylogenetic reconstuction methods Parsimony (NNI)Distance matrices estimation and I/O to files i...statistics (mean, var, sd, correlation, information theory)Classes for matrices implementation.Linear algebra...3961 days ago
Awesome perl frameworks, libraries and software - PART 3
...mpleTable perl distribution lovelle/perl-disque - Perl client for Disque, an in-memory, distributed job queue leto/math--matrixreal - Matrices of real numbers in Perl Klor...2507 days ago
Phylogenetic for Bioinformatics
...g various groups of organisms (for example, species or populations), which is discovered through molecular sequencing data and morphological data matrices. In other word, Phylogenetics...3959 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...l to generate data of related sequences along a given phylogeny, taking into account user defined system of neighbourhoods and instantaneous rate matrices. http://www.cibiv.at/software...3750 days ago
Conserved Domain Database (CDD) version 3.11 released
...ls. The new version now contains the most recent Pfam release 27. Updates to the Conserved Domain Database include: Position-specific score matrices (PSSMs) have been recomputed...3740 days ago
3318 days ago
3866 days ago
Needleman-Wunsch Algorithm in Perl
#!/usr/bin/perl # USAGE: perl nw.pl HEAGAWGHEE PAWHEAE BLOSUM50.txt -8 # See: "Biological sequence anaysis" Durbin et al. ed. CUP 1998, Pg. 19 # Needleman-W...2919 days ago
HiGlass: a tool for exploring genomic contact matrices and tracks.
HiGlass is a tool for exploring genomic contact matrices and tracks. Please take a look at the examples and documentation for a description of the ways that it can be configured to explore and compare contact matrices. To load private data, HiGlass can be run locally within a Docker container. Th...Tags: HiGlass, tool, exploring, genomic, contact, matrices, tracks, Visualization
2168 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
The FindMotif.pl program uses position-specific scoring matrices to search for sequences similar to a consensus sequence. Find more at http://www.people.vcu.edu/~elhaij/IntroBioinf/Notes/PSSM-Perl.html3650 days ago