Results for "meta-caller"
Blogs
Computer simulation of genetic mechanism !!
Computer simulation is the discipline of designing a model of an actual or theoretical physical/biological system, executing the model on a digital computer, and analyzin...2990 days ago
Software and Tools to detect structure variation with long reads !!
Uncovering the connection between genetics and heritable diseases requires an approach that looks at all the variant bases and types in a genome. While a PacBio de n...2623 days ago
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Bookmarks
- MetaPred2CS Web server is a meta-predictor based on Support Vector Machine (SVM) that combines 6 individual sequence based protein-protein interaction pred...
2635 days ago
- DISCOVAR is a new variant caller and DISCOVAR de novo a new genome assembler, both designed for state-of-the-art data. Their inputs are chosen to optimize quality while k...
2954 days ago
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Files
Bioinformatics approach to Boar Taint
Meat products obtained from intact male pigs often produce offensive smell or odour which is recognized as a complex genetic trait called boar taint.Androstenone and Skat...3805 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput short r...2701 days ago
Awesome perl frameworks, libraries and software - PART 3
fujiwara/perl-queue-q4pg-lite - simple message queue using PostgreSQL. formbuilder/formbuilder - Perl CGI::FormBuilder module for generating, validating, and...2509 days ago
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Top-level pages
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief description and homepage ALF A Simulation Framework for Genome Evolution http://www.cbrg.ethz.ch/alfBayes...3752 days ago
List of In-silico Binding Site Prediction Tools
Following are the list of In-silico Binding Site Prediction in Proteins tools CASTp : http://sts.bioengr.uic.edu/castp/ Computed Atlas of Surface Topography of pro...3759 days ago
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Wire posts
News
SPADes team announce new version SPADes v3.15
New SPAdes 3.15.0.0. announced by the SPADes team This release includes such new features as: - CoronaSPAdes pipeline for the assembly of transcriptomic and metatran...1221 days ago
Opportunity posts
Workshop on population and metagenomics analysis @ NERC
Workshop Overview A ten-day workshop taking place between 25 February - 6 March 2014 providing detailed hands-on training for population and meta-genomics analysis for...3823 days ago
- Gagneur lab at Gene Center, Ludwig-Maximilians-Universitaet, Munich, Germany Deadline for applications : January 15, 2014. Description : We seek a talented and m...
3785 days ago
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ResearchLabs posts
- Scientific Interests: Models and software for predicting who is at risk of carrying genetic variants that confer susceptibility to cancer. Application to breast, ovari...
3895 days ago
Bio-Scripts
Create genome scaffolding with Perl
#!/usr/bin/perl use warnings; use strict; use English; use Pod::Usage; ## uses pod documentation in usage code use Getopt::Long qw(:config auto_version auto_help...2324 days ago
Installing Busco version 4.0.6
(base) jit@jit-HP-Pro-3335-MT: conda install -c bioconda -c conda-forge busco=4.0.6 Collecting package metadata (repodata.json): done Solving environment: done ## Pa...1468 days ago
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Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and Biotechnology Institute at TUBITAK MAM Research Center. His research interest...2377 days ago
Tags
NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data
NextSV, a meta SV caller and a computational pipeline to perform SV calling from low coverage long-read sequencing data. NextSV integrates three aligners and three SV callers and generates two integrated call sets (sensitive/stringent) for different analysis purpose. The output of NextSV is in AN...Tags: NextSV, meta-caller, structural, variants, low-coverage, long-read, sequencing, data
2114 days ago
Comments
- Canu is one of the best de novo assemblers available for long reads - it’s a fork and updated version of the Celera assembler that was used to assemble the hum...
2190 days ago
Comment on "R and Bioconductor Tutorial"
Useful collection of an R "meta" book can be found at http://www.r-bloggers.com/an-r-meta-book/3721 days ago
