Software packages for next gen sequence analysis
...apping and Alignment Program) for mRNA and EST Sequences. Developed by...na reads against a range of Refseq RNA or NCBI genome builds for a n...o assembly of whole-genome shotgun microreads. ALLPATHS is a whole g...nd Mac * PolyBayesShort - A re-incarnation of the PolyBayes SNP disc...3263 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...nt tools including alignment, RNA-Seq, DNA-Seq, ChIP-Seq, Small RNA-Seq, Genome Browser, visualizat...assembly, variant detection, RNA-Seq, ChIP-Seq, Genome Browser,...ion: pipeline for discovering microsatellite tandem repeats wit...genomes (plus many other external sites); Only GRCh27 coordina...2929 days ago
Tools for Searching Repeats And Palindromic Sequences
..., SINES - Non-functional copies of RNA genes which have been reintegra...g a DNA (deoxyribonucleic acid) or RNA (ribonucleic acid) strand tha...the direction of transcription by RNA polymerase, DNA strands have...RepeatRunner REPuter Imperfect Microsatellite Extractor (IMEx)...2232 days ago
2890 days ago
Genome Assembly Tools and Software - PART1 !!
...r in multiple contexts in the microbial community under study. It...erlying bins (genomes) of the microbes in their metagenomes by si...o Transcriptome Assembly from RNA-seq Data BinPacker is a nove...rovide important insight into microbial communities. However, ass...2706 days ago
Awesome perl frameworks, libraries and software - PART 1
...lications with Perl (Perl web micro-framework) duckduckgo/zerocl...ingydotnet/mo-pm - Perl Micro Objects gnp/psh - Perl...d STDERR from Perl, XS or external programs beppu/squatting - A Camping-inspired Web Microframework for Perl tempire/...2510 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have originated from...DNA; DNA that is synthesized, by reverse transcriptase, from a Messenger RNA template ( Messenger RNA contains the coded informatio...2483 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...abundance quantification from RNA-seq data (uses pseudoalignment...pression of transcripts using RNA-seq data (uses k-mers)...e k-mers profiles of the RNA-seq paired-end reads Softwar...Estimation of abundances of microbial genomes in metagenomic...2392 days ago
2372 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s a...are the useful links: Single Cell RNAseq data analysis Tutorial A...low-level analysis of single-cell RNA-seq data A step-by-step work...ctor models applied to single-cell RNA-seq data separate biological...2371 days ago