Results for "neuromorphic computing"
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DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic genes found within complete genome sequences. As input, DAGchainer accepts a list of gene pairs with sequence homolog...2647 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
LoRDEC is a program to correct sequencing errors in long reads from 3rd generation sequen...e read data sets, included from eukaryotic or vertebrate species, on a usual computing server, and even works on des...2595 days ago
ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integ...systematically annotate a genome in one or more cell types. By automatically computing state enrichments for large-s...2586 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes ass...lies in real-time with Oxford Nanopore sequencing. The pipeline can run on a computing cluster as well as on a lapto...2552 days ago
Omega2: metagenome assembly pipeline
Omega found overlaps between reads using a prefix/suffix hash table. The overlap graph of...t, Omega provided more continuous assemblies overall using a fraction of the computing time of existing overlap-layo...2504 days ago
Ra assembler - a de novo DNA assembler for third generation sequencing data
Integration of the Ra assembler - a de novo DNA assembler for third generation sequencing data developed on Faculty of Electrical Engineering and Computing (FER), Ruder Boskovic Institu...2334 days ago
Seal: SEquence ALignment evaluation suite
Seal is a comprehensive sequencing simulation and alignment tool evaluation suite. T...calculating the number of reads that were correctly or incorrectly mapped. Computing run times and measures of acc...2327 days ago
DendroPy: a Python library for phylogenetic computing
DendroPy is a Python library for phylogenetic computing. It provides classes and functions for the simulation, processing, and manipulation of phylogenetic trees and character matrices, and su...2217 days ago
ASplice: a scalable and memory-efficient algorithm for de novo transcriptome assembly
With increased availability of de novo assembly algorithms, it is feasible to study entir...ata. New techniques are developed so that computations can be performed on a computing cluster with moderate amount...2146 days ago
IQ-TREE: Efficient software for phylogenomic inference
A fast and effective stochastic algorithm to infer phylogenetic trees by maximum likeliho...pares favorably to RAxML and PhyML in terms of likelihoods with similar computing time IQ-TREE found higher li...1916 days ago
