Results for "nucleotides"
Blogs
Basic command-line to run BLAST
...;.faa” instead of the usual ”.fasta”. This NCBI’s way of denoting that this is a fasta file with amino acids instead of nucleotides. How many sequences are in e...2257 days ago
Steps to find palindrome in genomes !
Palindromes are sequences of nucleotides that read the same backward as forward. They can be present in genomes and have various biological functions. Here are some...436 days ago
Bookmarks
Next generation sequencing(NGS) books
Employing different technologies, the purpose of NGS platform is to decode the identity or modification on the nucleotides. NGS platforms evolve quickly and capture the main stream. This bookmark is created to provide NGS online books links.3641 days ago
- ...tra-nucleotide is a fragment of DNA sequence with 4 bases (e.g. AGTC or TTGG). Pride et al. (2003) showed that the frequency of tetra-nucleotides in bacterial genomes contain...
2571 days ago
- +3 more Bookmarks
Files
- The genetic code consists of 64 triplets of nucleotides. These triplets are called codons.With three exceptions, each codon encodes for one of the 20 amino acids used in the synthesis o...
3492 days ago
Pages
Bio++ : C Language libraries for your biological need
...hes).Tree consensus methods, bipartitions, bootstrap value computations. Substitution models JC, K80, T92, F84, HKY85, TN93, GTR and more for nucleotides,JC, DSO78, JTT92 + any PAML-f...3961 days ago
Top-level pages
Tools for Searching Repeats And Palindromic Sequences
...are made in detection methods this number is expected to increase. On the other hand; In genetics, the term palindrome refers to a sequence of nucleotides along a DNA (deoxyribonucleic...2224 days ago
- ...by greatly increasing the scale of operations and thus the number of nucleotides, and the number of copies of...same fragment and keep track of the paired data. Adapter Short oligonucleotides which are attached to the DNA...
2882 days ago
- +2 more Top-level pages
News
- Fifteen scientists led by Dr Jong Bhak of Genome Research Foundation, South Korea, decoded as many as 3 billion nucleotides (organic molecules that form the basic building blocks of nuc...
3896 days ago
Bio-Scripts
Perl script to Mutate a DNA Sequence
...domelement { my(@array) = @_; return $array[rand @array]; } sub randomnucleotide { my(@nucleotides) = ('A', 'C', 'G', 'T'); return randomelement(@nucleotides); }2929 days ago
- #!/usr/bin/perl # make three strings of nucleotides $dna1 = “AAAAAAAAAAAAAAATGAAAAAAAAAAAAAAAA”; $dna2 = “AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA”; $dna3 = “ATGAAAAAAAAAATGAAAAAAAAA...
2922 days ago
- +3 more Bio-Scripts
Tags
miRNA seed site determination in target mRNA?
Dear friends, While reading an article ("miR-143 is downregulated in cervical cancer and promotes apoptosis and inhibits tumor formation by targeting Bcl-2") I encounterd that they give seed site of miRNA but I do not understand how they achieve. Is there any method or tool to get any estimation...Tags: miRNA, mRNA, seed site, blast, nucleotides
3762 days ago
Steps to find palindrome in genomes !
Palindromes are sequences of nucleotides that read the same backward as forward. They can be present in genomes and have various biological functions. Here are some methods for discovering palindromes in genomes: Direct sequence search: One of the simplest ways to discove...Tags: Palindromes, sequences, nucleotides, reads, backward, forward, methods, steps
436 days ago
Comments
Comment on "Sibelia: A comparative genomics tool"
...e we find: 1st pair: ... act gaga ggc ... 2nd pair: ... act gatg ggc ... As we see, distance between "act" and "ggc" is less than 5 nucleotides so we replace "gatg" by "gag...1298 days ago
