2028 days ago
2013 days ago
Installing Platypus on Ubuntu !
(py27) ➜ Tools git:(master) ✗ git clone https://github.com/and.../usr/local/lib/pkgconfig if test...file tabix /usr/local/bin if test -n ""; then install -p ; fi...guage_level' not set, using 2 for now (Py2). This will change in...guage_level' not set, using 2 for now (Py2). This will change in...2013 days ago
2012 days ago
Finding Kmers from fasta sequence file
Save it in sample.fa >test TAATGCCATGGGATGTT jellyfish count -m 3 -s 100000 sample.fa -o sample.jf jellyfish dump -c sample.jf It return TGT 1 GAT 1 GGG 1 GGA 1 CAT 1 TGC 1 TAA 1 GCC 1 CCA 1 GTT 1 TGG 1 ATG 3 AAT 11966 days ago
Install Samtools, Bcftools and htslib on Ubuntu !
#Inspired from online search sudo apt-get update sudo apt-get install gcc sudo apt-get install make sudo apt-get install libbz2-dev sudo apt-get install zlib1g-de...1552 days ago
Bash commandline to install Anaconda !
...f63c60_1 ... installing: libgfortran-ng-7.3.0-hdf63c60_0 ......1.3.2-py37_0 ... installing: testpath-0.4.2-py37_0 ... instal...3.1-py37_0 ... installing: pytest-...2.4-py37_0 ... installing: nbformat-4.4.0-py37_0 ... installin...workshop/wsu29/.bashrc ==> For changes to take effect, close...1549 days ago
Pack a perl program with their dependencies on Ubuntu !
...tree Reading state information... Done The following add...1-2) ... Processing triggers for man-db (2.8.3-2ubuntu0.1) ... #you can find the test script web.pl at https://bioinformaticsonline.com/snippets/view/41440/pe...TAMPR/bin$ ./web https://bioinformaticsonline.com #It return this...1505 days ago
1436 days ago
Command to sort the bed file !
#Command to sort the bed file sort -V -k1,1 -k2,2 test.bed1383 days ago