Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection, one is...is process of WGD. I searched for the keyword "wgd pipeline" an...12/WGDdetectorhttps://bmcbioinformatics.biomedcentral.com/artic...ecause it depends on a lot of software. wgd depends on the following software BLASTMCLMUSCLE/MAFFT/PR...1152 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Ga...e JA, Kellam P, Otto TD. Bioinformatics. 2015 Jul 15;31(14):2374-6. doi: 10.1093/bioinformatics/btv120. Epub 2015 Feb 2...& Grabowski, S. BMC Bioinformatics 14, 160 (2013). Kraken...ore Team (2013). R Foundation for Statist...1044 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimm...on routes (iVar variants and consensus; default for amplicon data || BCFTools, BEDTools; default for me...ort (QUAST) Present QC and visualisation for raw rea...874 days ago
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List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Structural and Functional A...mic Clusters Database Find information about orthologous genes in p...vestock QTL database tool set for positional QTL information mining...ents. CORG -- A database for COmparative Regulatory Genomics D...674 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
1. *Nick Barton:* - The textbook "Evolution" by Nick Barton, with resources for exploring the literature: Barto...cal theory of natural selection. Oxford University Press, Oxford...s (U.S.A.) 79: 142-45. Testing for se...att Ridley. Evolution (Univ. of Oxford Press,...674 days ago
Finding a mimicry game for teaching on-line and mentioned general resources
Mimicry and other resources Mimicry games: Great Heliconius game: http:/...cgi Population Genetics: https://www.radford.edu/~rsheehy/Gen_flash/popge...u/cals/gn/ex/y-chrom.html A professional online...any.org/index.php?P=Home Finally, Donald Forsdyke ha...674 days ago
Useful link to teach evolution !
Mimicry and other resources Mimicry games: Great Heliconius game: http:/...cgi Population Genetics: https://www.radford.edu/~rsheehy/Gen_flash/popge...u/cals/gn/ex/y-chrom.html A professional online...any.org/index.php?P=Home Finally, Donald Forsdyke ha...574 days ago
Bioinformatics tools to explore SSRs in genomes !
There are several bioinformatics tools that can be used to explor...ty regions. SciRoKo: SciRoKo is a software tool that can identify S...eb-based tool that designs PCR primers for SSRs. It can design primers for pe...(Quick Detection of Duplication) is a software to...422 days ago
Common methods to discover tandem repeats
Tandem repeats are DNA sequences that are repeat...search. Here are some methods for discovering tandem repeats in...er: Tandem Repeat Finder is a software tool that identifies tan...NA sequences. It is available for free download and can be used...el. This method can be useful for detecti...420 days ago