PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
PLAST is a fast, accurate and NGS scalable bank-to-bank sequence simil...algorithms. Relying on unique software architecture, PLAST take...hardware devices. PLAST stands for Parallel Local Sequence...was published in BMC Bioinformat...itional hardware, since it is a software so...2362 days ago
MetaSim A Sequencing Simulator for Genomics and Metagenomics.
Our software can be used to generate collections of synthetic reads that reflect the diverse taxonomical composition of typical metagenome data sets. Based on a...2359 days ago
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NanoSim: nanopore sequence read simulator based on statistical characterization.
NanoSim, a fast and scalable read simulator that captures the technolo...ific features of ONT data and allows for adjustments upon improvement...ious step to produce in silico reads for a given reference genome. Nan...tre website: http://www.bcgsc.ca/platform/bioinfo/software/na...2345 days ago
Foldit: Solve Puzzles for Science
Foldit is an online puzzle video game about protein folding. It is part of an experimental research project developed by the University of Washington, Center for Game Sc...2342 days ago
snakepipes: A toolkit based on snakemake and python for analysis of NGS data
snakePipes are flexible and powerful workflows built using snakemake that simpl...conda : 'conda install -c mpi-ie -c bioconda -c conda-forge...s://snakepipes.readthedocs.io/en/latest/) are available online.1817 days ago
xmatchview: smith-waterman alignment visualization
xmatchview and xmatchview-conifer are imaging tools for comparing the synteny between...align 2 DNA sequences in fasta format using cross_match and disp...lignment in a variety of image formats. xmatchview and xmatchvie...f the Smith-Waterman algorithm for co.../www.bcgsc.ca/platform/bioinfo/software/xm...2335 days ago
CAMSA :: a tool for Comparative Analysis and Merging of Scaffold Assemblies
CAMSA – is a tool for Comparative Analysis and Merging...emblies, distributed both as a standalone software package and as Python li...;techniques, supporting multiple existing format...sembly provides an interactive framework for a visua...2335 days ago
3d-dna: 3D de novo assembly (3D DNA) pipeline
This code is designed to enable anyone to reproduce the Hs2-HiC and the AaegL4 genomes re...procedure is described in detail in the Supporting Online...questions and comments at: http://www.aidenlab.org/forum.html...2335 days ago