Results for "output"
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CGView - Circular Genome Viewer
...onent of sequence annotation pipelines, as a means of generating visual output suitable for the web. Feature...ith existing web site content or databases. For examples of the various output types, see the CGView gallery...2145 days ago
AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
...tomatic Filtering, Trimming, Error Removing and Quality Control for fastq data AfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and...2136 days ago
- ...rors, haplotype variations, or putative RNA editing events. The primary output of our tool is a FASTA file c...detect transcript isoforms, which are reported as splice graphs in dot output format....
2132 days ago
NAViGaTOR: Network Analysis, Visualization and Graphing Toronto
...for scaleable visualizing and analyzing networks. The current version, NAViGaTOR 3, increases modularity, improves scaleability, extends input/output options, brings new network v...2132 days ago
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
...n histogram of k-mer occurrences from a sequence file. Adds metadata in output for easy plotting. gcp: ...es a K-mer coverage plot for a single sequence. Takes in fasta coverage output coverage from the "sect" tool...1981 days ago
NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data
...SV integrates three aligners and three SV callers and generates two integrated call sets (sensitive/stringent) for different analysis purpose. The output of NextSV is in ANNOVAR-compa...2098 days ago
Snippy: Rapid haploid variant calling and core SNP phylogeny
...use as many CPUs as you can give it on a single computer (tested to 64 cores). It is designed with speed in mind, and produces a consistent set of output files in a single folder. It...2024 days ago
Wtdbg2: a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore
...io or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly output. Wtdbg2 is able to assemble t...2024 days ago
- ...rovides a command-line interface and available at https://github.com/jefftc/changlab. A user first searches in the knowledge base for desired output and then BETSY develops an in...
1965 days ago
wtdbg2: A fuzzy Bruijn graph approach to long noisy reads assembly
...io or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly output. ./wtdbg2 -x rs -g 4.6...1916 days ago
