Results for "overlapping"
Blogs
BBTools for bioinformatician !
...nning the shellscript with no arguments. Dedupe will merge assemblies, but it will not produce consensus sequences or join overlapping reads; it only removes sequen...2281 days ago
List of comparative genomics resources !
...otic Paralog Group Database Find eukaryotic paralog/paralogon information. EVOG -- evolutionary visualizer for overlapping genes Analyze the evolutionary process of overlapping genes when comparing differen...688 days ago
Bookmarks
PAired-eND Assembler for DNA sequences
PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. More at https://github.com/neufeld/pandaseq2962 days ago
YASS :: genomic similarity search tool
...you can specify the seed pattern used in the search step (as provided for example by iedera). Main features of YASS are: multiple, possibly overlapping seeds and a new hit criterion...2936 days ago
- +16 more Bookmarks
Top-level pages
Using Interval Trees to Query Genome Annotations by Position
To work on query related to overlapping genomic features: use IntervalTree python pkg http://informatics.malariagen.net/2011/07/07/using-interval-trees-to-query-genome-annotations-by-...3560 days ago
Genome Assembly Tools and Software - PART1 !!
...er for DNA sequences PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. ZORRO 2.2 &nda...2696 days ago
- +1 more Top-level pages
Wire posts
Bio-Scripts
Check overlapping range with Perl
#!/usr/bin/perl use strict; use warnings; my @ranges = 0; push @ranges, $ranges[-1] + 1 + int rand 200 for 1..10000; my @tests = map int rand $ranges[-1], 0..100...2638 days ago
Create genome scaffolding with Perl
...ences "prefix" => "psl_scaffold_", # prefix for contig names "pid" => 90, # percent ID threshold "trimlimit" => 50, # max number of overlapping bases outside match region...2319 days ago
- +3 more Bio-Scripts
Tags
- Development packages for zlib and libbz2 are needed, as well as a standard compiler environment. On Ubuntu, this can be installed via: sudo apt-get install build-essential libtool automake zlib1g-dev libbz2-dev pkg-config On MacOS, the Apple Developer tools and Fink (or MacPorts or Brew) must...
Tags: PANDASEQ, program, align, Illumina, reads, PCR, primers, sequence, reconstruct, overlapping, sequence
2063 days ago
Comments
- ...nbsp; Move to the next feature not overlapping the current coordinates. ...
1531 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...Maximum allowed number of seeding fragments' hits. [200] -V --SV-len [INT] Expected maximum length of SV. [10000] -v --ovlp-rat [FLOAT] Minimum overlapping ratio to cluster two skeleton...2133 days ago
- +2 more Comments
