Results for "pairwise"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...://www.lgm.upmc.fr/CHROnicle/SynChro.html) SynChro is a tool designed to define conserved synteny blocks. It reconstructs synteny blocks between pairwise comparison of multiple genome...2616 days ago
Bookmarks
- LASTZ is a program for aligning DNA sequences, a pairwise aligner. Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful f...
2945 days ago
- HapSolo, that identifies secondary contigs and defines a primary assembly based on multiple pairwise contig alignment metrics. HapSolo evaluates candidate primary assemblies using BUSC...
1099 days ago
- +25 more Bookmarks
Pages
Bio++ : C Language libraries for your biological need
...yata and Grantham) + import from any AAIndex entry.Consensus sequences.Pairwise alignment.Similarity score co...for codominant and sequence data.Estimation of Wright F-statistics and pairwise genetic distance on codominan...3954 days ago
Genome Assembly Tools and Software - PART2 !!
...7.7 – A Cycle-Basis Algorithm for Accurate Haplotype AssemblyHapCompass for polyploid genomes can currently be used to create accurate pairwise SNP phasings.Given a set of a...2692 days ago
Top-level pages
- ...me readily available through the introduction of PsiBLAST [3]; studying evolutionary aspects, by the construction of phylogenetic trees from the pairwise differences between sequences...
3953 days ago
List of In-silico Binding Site Prediction Tools
...ragment with those selected from the canonical functional surfaces of >19,000 structures in the SplitPocket (http://pocket.uchicago.edu/). The pairwise alignment of the unbound and...3750 days ago
- +4 more Top-level pages
Wire posts
News
- ...f “used” observations for such models. This fixes PR#16198, quite differently than proposed there. The print() methods for "htest", "pairwise.htest" and "power.htest" obje...
3311 days ago
Video
Introduction to Bioinformatics - Week 2 - Lecture 1
...informatics Lecture Title: Introduction to biology, biological databases, and high-throughput data sources. Overview of bioinformatics problems. Pairwise sequence alignment algorithms...3909 days ago
Introduction to Bioinformatics - Week 2 - Lecture 2
...informatics Lecture Title: Introduction to biology, biological databases, and high-throughput data sources. Overview of bioinformatics problems. Pairwise sequence alignment algorithms...3909 days ago
Bio-Scripts
- ...reshold for extending hits [Integer] default = 0 -e Expectation value (E) [Real] default = 10.0 -m alignment view options: 0 = pairwise, 1 = query-anchored showing...
956 days ago
Script to rapid genome clustering based on pairwise ANI
...ost of sensitivity: blastn -query -db -outfmt '6 std qlen slen' -max_target_seqs 10000 -perc_identity 90 -o -num_threads 32 Next, calculate pairwise ANI by combining local alignm...641 days ago
Tags
PSPairwise Sequentially Markovian Coalescent (PSMC) model
Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) modelTags: Pairwise, Sequentially, Markovian, Coalescent, PSMC, model, genomics, population
2214 days ago
Many-to-many pairwise alignments of two sequence sets
needleall reads a set of input sequences and compares them all to one or more sequences, writing their optimal global sequence alignments to file. It uses the Needleman-Wunsch alignment algorithm to find the optimum alignment (including gaps) of two sequences along their entire length. The algori...Tags: Many-to-many, pairwise, alignments, sequence, sets, needleall, Needleman-Wunsch
2153 days ago
- +2 more Tags
Comments
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
Parallelized pairwise sequence alignment using CUDA on multiple GPUs http://www.biomedcentral.com/1471-2105/10/S7/A33654 days ago
