Results for "peak calling"
Blogs
Bioinformatics PhDs - Cover Letter
..., call the department and ask to speak to someone on the search comm...has been published and Yale comes calling. They often don't se...to the point, Yale rarely "comes calling." An even greater burde...t doing some research so you can speak in more specific terms about how...3360 days ago
Calling narrow and broad peaks from ChIP-Seq data
...emented in Strand NGS for detecting the binding sites of transcription factor (narrow peaks) and enriched regions of histone modification (broad peaks) from ChIP-Seq data.Read the benchmarking study on Calling narrow and broad peaks from C...3192 days ago
- +7 more Blogs
Bookmarks
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performan...1141 days ago
Next Generation Sequencing (NGS) Tutorials
Institute of computational biomedicine, Cornell University provide an NGS workshop...nformatics/btr441 ngs_backbone: a pipeline for read cleaning, mapping and SNP calling using Next Generation Sequenc...3482 days ago
- +41 more Bookmarks
Files
Bioinformatics approach to Boar Taint
Meat products obtained from intact male pigs often produce offensive smell or odour...sp;version 10.2 reference assembly using Bowtie2. Alignment file then used for calling SNPs and InDels inside previo...3784 days ago
Pages
Awesome perl frameworks, libraries and software - PART 2
...softlayer-api-perl-client - A set of Perl libraries that assist in calling the SoftLayer API. singin...Plugin to serve data from MogileFS UUPharmacometrics/PsN - Perl-Speaks-NONMEM urandom/p2js - IWL...2489 days ago
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...oud computing. Langmead et al, Genome Biol 10(11):R134, 2009 Full Text Calling SNPs without a reference s...epresentation of specific ontology categories among genes near ChIP-seq peaks Next-gen-seq software - a list...3774 days ago
Next generation sequencing in R or bioconductor environment
...q. chipseq The chipseq package combines a variety of HT-Seq packages to a pipeline for ChIP-Seq data analysis. Documentation BayesPeak BayesPeak is a peak calling package for identifying DNA b...3619 days ago
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Wire posts
News
- A team from Cold Spring Harbor Laboratory has released an algorithm, called Scalpel...ccount for simple sequence repeats that are a regular source of error in indel calling. When Scalpel assembles an ex...
3541 days ago
Roche has acquired Bina Technologies !!!
Bina Technologies is a privately held company that provides a big data platform for...ox, a platform for secondary genomic analysis, sequence alignment, and variant calling, but since 2012, it has devel...3408 days ago
- +5 more News
Opportunity posts
Research Associate @ INDIAN INSTITUTE OF SPICES RESEARCH
INDIAN INSTITUTE OF SPICES RESEARCH (Indian Council of Agricultural Research) Mar...m marks prescribed by the Institute in written test only will be eligible for calling for the interview. The number...3764 days ago
Research Associate @ INDIAN INSTITUTE OF SPICES RESEARCH
INDIAN INSTITUTE OF SPICES RESEARCH (Indian Council of Agricultural Research) Mar...m marks prescribed by the Institute in written test only will be eligible for calling for the interview. The number...3778 days ago
- +3 more Opportunity posts
Bio-Scripts
- # Count k-mer occurrence using Jellyfish 2.2.6 jellyfish count -t 8 -C -m 19 -s 5G -o 19mer_out --min-qual-char=? sread_1.fastq sread_2.fastq # points for a histogram jellyfish histo -o 19mer_out.histo 19mer_out #Plot results using R ##load the data into dataframe19 dataframe19
2259 days ago
- ...----------------------- Base Calling:...ty for specified Illumina basecalling data. CollectIlluminaB...eads in a HiSeqX Illumina Basecalling directory into various catego...Tools that perform variant calling and genotyping for short vari...
2070 days ago
- +3 more Bio-Scripts
Tags
Calling narrow and broad peaks from ChIP-Seq data
Know about the state-of-the-art algorithms implemented in Strand NGS for detecting the binding sites of transcription factor (narrow peaks) and enriched regions of histone modification (broad peaks) from ChIP-Seq data.Read the benchmarking study on Calling narrow and broad peaks from ChIP-Se...Tags: ChIP-Seq, strand ngs, peak calling, PICS, MACS, broad peaks, narrow peaks
3192 days ago
