Results for "phase"
Blogs
Tools and Method for Haplotype phasing !
...ults, however, is best exploited through phased haplotypes, which classify t...and SNP array data normally take the form of unphased genotypes, one does not spec...ashington.edu/browning/beagle/beagle.html fastPHASE: http://stephenslab.uchi...1347 days ago
String graph based genome assembly software and tools !
...e FM-index. As the FM-index is a compressed data structure, the algorithms are very memory efficient. The SGA assembly has three distinct phases. The first phase corrects base calling errors...2337 days ago
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Bookmarks
GAM-NGS: genomic assemblies merger for next generation sequencing
...ing the same genomic locus (called blocks) are identified through reads' alignments and stored in a weightedgraph. The merging phase is carried out with the help...2702 days ago
- ...rt. This algorithm was first implemented in my fermi assembler and then refined a few times in fermi, fermi2 and now in BFC. In the k-mer counting phase, BFC uses a blocked bloom fil...
2174 days ago
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Top-level pages
- ...merge sorting. Sorting can be done on each segment of data after dividing data into segments and sorting of entire data can be obtained in conquer phase by merging them.The binary se...
3954 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...r investigation of the background prevalence of exonic variation in the Phase 3 1000 Genomes data under use...rogram; GeneVetter uses GRch37p4 (hs37d5.fa.gz), dbSNP build 138, 1000G Phase 3, clinvar_2014072 Input: VC...2917 days ago
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Wire posts
News
- ...tive by the US National Center for Biotechnology Information (NCBI) has its way. On 22 October, the NCBI of Bethesda, Maryland, launched the pilot phase of a programme called PubMed...
3854 days ago
Atlas of ancient inter-ethnic group !!!
...he plain of the River Ganges in Northern India is presumed to have taken place in the Middle to Late Bronze Age, contemporary to the Late Harappan phase in India (ca. 1700 to 1300 BC...3741 days ago
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Opportunity posts
RCB Gurgaon Bioinformatics RA/PA Openings
...n our websites: www.rcb.res.in and www.rcb.ac.in. Applications should be sent to the Registrar, Regional Centre for Biotechnology, 180 Udyog Vihar Phase 1, Gurgaon-122016, Haryana, I...3728 days ago
Research Scientist – National Institute of Cholera and Enteric Diseases
The following post is to be filled up on purely temporary basis under the project entitled "Second phase of Task Force Biomedical Informatics Center of ICMR" under Dr. Santasabuj Das...3491 days ago
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Video
- ...used in subsequent years to identify several human disease genes, such as Huntington's and BRCA1. Variations of this method enabled the sequencing phase of the Human Genome Project....
3881 days ago
Bio-Scripts
- ...----------------------------------------------- -------------- Trinity Phase 1: Clustering of RNA-Seq Read...------------------------------------------------- ------------ Trinity Phase 2: Assembling Clusters of Rea...
2135 days ago
Python script to parse GFF file
...'end': int(fields[4]), 'score': fields[5], 'strand': fields[6], 'phase': fields[7],...47 days ago
Tags
Converting a VCF into a FASTA given some reference !
Samtools/BCFtools (Heng Li) provides a Perl script vcfutils.pl which does this, the function vcf2fq (lines 469-528) This script has been modified by others to convert InDels as well, e.g. this by David Eccles ./vcf2fq.pl -f <input.fasta> <all-site.vcf> ...Tags: Convert, VCF, FASTA, reference, genome, assembly, phase
2124 days ago
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Comments
Comment on "Various scholarships around the world !!"
...earch as a driving force behind the production of new knowledge and the first link in the innovation process. The F.R.S.-FNRS is in a development phase which will see its organisati...2652 days ago
