Next Generation Sequencing (NGS) Tutorials
...========================== NGS data analysis pipelines Detecting and annotating genetic variations using the HugeSeq pipeline DOI: 10.1038/nbt.2134...34/abstract WEP: a high-performance analysis pipeline for whole-exome data htt...3484 days ago
shovill: Assemble bacterial isolate genomes from Illumina paired-end reads
Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also supports...1216 days ago
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Awesome bioinformatics pipelines !
A curated list of awesome pipeline toolkits ... https://github.com/pditommaso/awesome-pipeline2954 days ago
REAPR: a universal tool for genome assembly evaluation
...a genome assembly using mapped paired end reads, without the use of a reference genome for comparison. It can be used in any stage of an assembly pipeline to automatically break incorr...2948 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
...r Oxford Nanopore MinION). The software is currently alpha level, feel free to use and report issues encountered. Canu is a hierachical assembly pipeline which runs in four steps:...2911 days ago