ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis
ProteoClade is a Python library for taxonomic-based annotation and quantific...of time, such as those involving Patient-Derived Xenografts (PDXs) or host-pathogen interactions. Reference protein sequence...1501 days ago
QuartataWeb: user-friendly server developed for polypharmacological and chemogenomics analyses.
Data on protein-drug and protein-chemical interactions are rapidly accumulating in databases su...ITCH. These data usually reflect observed interactions, while the lack of data for...air does not necessarily mean the lack of interaction. Indeed, recent studies, both...1488 days ago
ShinyGO v0.61: Gene Ontology Enrichment Analysis + more
2/3/2020: Now published by Bioinformatics. 11/3/2019: V 0.61, Impr...terms and othe pathways for over 315 plant and animal species, based on...n from Ensembl (Release 96), Ensembl plants (...ping terms/pathways, protein-protein interaction networks, gene characterristi...1425 days ago
vsFilt: A tool to improve virtual screening by structural filtration of docking poses
The vsFilt is the first open application for post-docking...sy to use and configure to detect a wide range of interaction types that are known to be in...tion, including hydrogen and halogen bonds, ionic interactions, hydrophobic contacts, π-...1250 days ago
The Breeding API (BrAPI) project
The Breeding API (BrAPI) project is an effort to enable interoperability among plant breeding databases. BrAPI is a standardized RE...eb service API specification for communicating plant br...ard is free to be used by anyone interested in plant breed...1207 days ago
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PhyloHerb: A high‐throughput phylogenomic pipeline for processing genome skimming data
Phylogenomic Analysis Pipeline for Herbarium Specimens What is PhyloHerb: PhyloHerb i...o process genome skimming data collected from plant ma...ne for processing genome‐skimming data. Applications in Plant Scien...235 days ago
PhyloHerb: Phylogenomic Analysis Pipeline for Herbarium Specimens
What is PhyloHerb: PhyloHerb is a wrapper program to process genome skimming data collected from plant mater...67 days ago
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