Results for "ploidy"
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InfoGenomeR: Integrative reconstruction of cancer genome karyotypes
...n that uses a breakpoint graph to model the connectivity among genomic segments at the genome-wide scale. InfoGenomeR integrates cancer purity and ploidy, total CNAs, allele-specific...1100 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
ConPADE (Contig Ploidy and Allele Dosage Estimation), a probabilistic method that estimates the ploidy of any given contig/scaffold...encing coverage is available, or the true contig ploidy is low. https://github...2631 days ago
nQuire: a statistical framework for ploidy estimation using next generation sequencing
nQuire provides a statistical framework to study organisms with intraspecific variation in ploidy. nQuire is likely to be useful in epidemiological studies of pathogens, artificial se...2044 days ago
nQuire: A statistical framework for ploidy estimation using NGS short-read data
nQuire implements a set of commands to estimate ploidy level of individuals from species, where recent polyploidization occurred and intraspecific ploidy variation is observed. Specif...1925 days ago
Smudgeplot: Inference of ploidy and heterozygosity structure using whole genome sequencing data
...A + CovB) to their relative coverage (CovB / (CovA + CovB)). Such an approach also allows us to analyze obscure genomes with duplications, various ploidy levels, etc. Smudgeplots are...804 days ago
HairSplitter: assembling long reads in an unknown number of haplotypes
...bsp; Limited in the number of haplotypes Strengths of HairSplitter: Very modular, can be used with any assembler Naive: makes no assumption on ploidy, parameter-free Safe: won&rs...519 days ago
MIKE: an ultrafast, assembly-, and alignment-free approach for phylogenetic tree construction
...and 43 Saccharum spontaneum samples. MIKE demonstrated accurate performance across varying evolutionary scales, reproductive modes, and ploidy levels, proving itself as a p...31 days ago
