Results for "population"
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DISTRUCT: a program for the graphical display of population structure
...ficients in the same form as used in "Genetic structure of human populations" Science 298: 2381...us options enable the user to control left-to-right printing order of populations, bottom-to-top printing orde...1871 days ago
Π-cyc: A Reference-free SNP Discovery Application using Parallel Graph Search
Reference free SNP search for comparative population genomics: multiple samples run simultanously. **experimental phase, compiles and runs with OpenMPI-1.8.8 with Intel Compiler only C...1562 days ago
mutatrix: a population genome simulator which generates simulated genomes.
genome simulation across a population with zeta-distributed allele frequency, snps, insertions, deletions, and multi-nucleotide polymorphisms More at https://github.com/ekg/mutatrix ./mutatrix -S sample -P test/ -p 2 -n 10 reference.fasta1562 days ago
- ...is particularly useful for investigating intra-species HGcoT, where presence-absence status of acquired genes is usually confounded by bacterial population structure due to clonal repro...
1523 days ago
- VICUNA is a de novo assembly program targeting populations with high mutation rates. It creates a single linear representation of the mixed population on which intra-host variants...
1352 days ago
CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R
...rs all necessary steps from sequence similarity searches, codon alignments to Ka/Ks calculations and synteny. The new R package targets ecology, population and evolutionary biologists w...1273 days ago
VCF2PopTree: a client-side software to construct population phylogeny from genome-wide SNPs
...er’s computer/browser. VCF2PopTree is compatible with all population browsers including Chrome, Op...en, D. (2019). VCF2PopTree: a client-side software to construct population phylogeny from genome-wide SN...865 days ago
Creating Genetic Maps from GBS data
...xamining their progenies. These kinds of crosses to create specific group of individuals of known ancestry is called as mapping population. Many types of mapping population exist. Here we will use the d...243 days ago
- An R package for performing principal component analysis (PCA) of genomics data. The package performs PCA, generates the publication-ready plots, and identifies population-specific outlier individuals. The package can be accessed on GitHub: https://github.com/Devashish13/PopulationStructure
45 days ago
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