Alien_Hunter : prediction of putative Horizontal Gene Transfer (HGT) events
...sition of a sequence compared to fixed-order methods. Optionally the predictions can be parsed into a 2-state...ize the localization of the boundaries of the predicted regions. The predictions (embl format) can be automati...2318 days ago
GLEAN: an unsupervised learning system to integrate disparate sources of gene structure evidence
GLEAN is an unsupervised learning system to integrate disparate sources of gene structure evidence (gene model predictions, EST/protein genomic sequence alignments, SAGE/peptide tags, etc) to produce a consensus gene prediction, without prior training.2172 days ago
2092 days ago
GenomeThreader: Gene Prediction Software
GenomeThreader is a software tool to compute gene structure predictions. The gene structure predictions are calculated using a similarity-based approach where additional cDNA/EST and/or protein se...2049 days ago
Genome Annotation using MAKER tutorial !
MAKER is a great tool for annotating a reference genome using empirical and ab initiogene predictions. GMOD, the umbrella organization that includes MAKER, has some nice...1971 days ago
MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
...analysis of neurons divided by Immediate Early Gene expression levels. In summary, MAGIC is a standalone application that produces meaningful predictions of TFs and cofactors in trans...1264 days ago
Breedbase is a comprehensive breeding management and analysis software
...of genotyping samples in a field, store large amounts of high density genotypic information, and provide Genomic Selection related analyses and predictions. Breedbase supports the BrAPI...1223 days ago
1216 days ago
oGNM:Conformational dynamics based on contact topology in a coarse-grained presentation
...saving >1/2 time) and more accurate (enhanced correlation between predictions and B-factors). The environme...derived in this work and proven to be more accurate in the B-factor predictions than conventional GNM....847 days ago
CrowdGO: Machine learning and semantic similarity guided consensus Gene Ontology annotation
CrowdGO is a protein Gene Ontology predictor using a meta approach, analyzing the predictions of other tools in order to get an improved precision and recall. Please note that the Crow...719 days ago