Results for "protein"
Users
Interests: Protein3529 days ago
- Skills: Protein sequence/structure annotation
2297 days ago
- +3 more Users
Blogs
Computational Proteomics : Lets remember the basics
I spend some of my valuable time in computational drug designing sector. I remember my initial proteomics days, playing with interactive protein visualization software and dreaming bi...3485 days ago
List of gene ontology software and tools
...TOME pathways, and TRANSFAC motifs to a user-specified group of genes, proteins or microarray probes. g:GOSt...of experimental data. MetaCore is based on a curated database of human protein-protein, protein-DNA interact...3707 days ago
- +15 more Blogs
Bookmarks
- ...mental topics in bioinformatics: assembling genomes, comparing DNA and protein sequences, predicting genes,...g evolutionary trees, analyzing genome rearrangements, and identifying proteins. Please paste other useful...
3943 days ago
- Enzyme Portal- To look for information about the biology of a protein with enzymatic activity. The enzyme portal integrates many resources, most of them hosted by EBI and also e...
3894 days ago
- +78 more Bookmarks
Files
Master Thesis: Trans-membrane topology prediction through Markov based decoders
...uctural information on alpha helical membrane protein (MPs) has hindered thus far t...r automatic prediction of trans-membrane (TM) protein structure. While algorithm fo...of the sequences in a standard dataset of 86 proteins with supervised topology. Th...3942 days ago
- Protein is a part of every cell in your body, and no other nutrient plays as many different roles in keeping you alive and healthy. Protein is the building block of our...
3551 days ago
Discussion topics
how could be a molecular dynamics be helpful studying the protein's conformation
give your views3486 days ago
Pages
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, database parsing, and other Bioinformatics tools.BioRuby project provides...3945 days ago
- ...piled by theVirtual School of Natural Sciences BioComputing Division. Protein Sequence Alignment and Databa...ry. Defines terms used in different subfields, currently Glycoscience, Protein Structure. LASSAP a LArge Sc...
3919 days ago
- +4 more Pages
Top-level pages
- ...e not enough to handle all sort of biological needs, which compel us to learn new biologically suitable language to handle ever growing genome or protein sequences. The next step aft...
3945 days ago
- ...h as determination of DNA and protein sequences, investigation of protein functions, development of pha...ide and amino acid sequences, protein domains, and protein structur...the subcellular location of a protein. The ultimate goal of sequen...
3945 days ago
- +26 more Top-level pages
Wire posts
News
Vaccination can be dangerous sometimes !!!
...und the cap and the stem of that virus’s haemagglutinin. But some of those antibodies also targeted the stem of H1N1’s haemagglutinin protein, helping that virus fuse to c...3892 days ago
DNA Bending Propensity in the Presence of Base Mismatches: Implications for DNA Repair
...y and molecular biology at Michigan State University. Feig studies the proteins MutS and MSH2-MSH6, which re...defective DNA and initiate DNA repair. Natural DNA repair occurs when proteins like MutS (the primary prote...3909 days ago
- +18 more News
Opportunity posts
Structural polymorphism analysis from NGS data
...improving the adaptive capacity of agroecosystems it will be critical to establish a link between sequence variation, functional variation, gene/protein expression and phenotypic ada...3946 days ago
- ...and basic programming skills are a prerequisite for this position. Experience with high throughput sequencing analysis methods, machine learning, protein interaction databases, perl/p...
3946 days ago
- +49 more Opportunity posts
ResearchLabs posts
- ...velops algorithms for a diverse set of problems in computational molecular biology. They are particularly interested in predicting specificity in protein interactions and uncovering h...
3946 days ago
The Centre for Bioinformatics (MCB) Lab
...d computational methods for the analysis of this data in breast cancer. We have worked on probabilistic models for subcellular localization, protein-protein interactions, and problems re...3946 days ago
- +23 more ResearchLabs posts
Fun
The Best Bioinformatics / Computational Biology Quotes
...te chromosome ! Be nice to the BioGeek, for all you know they might be the next curator! Beware of computational biologist they screw genes and protein. Warning! Your genome is ful...3718 days ago
Video
- http:--www.biotechnology.jhu.edu- Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are related to a sequence that the user provides.
3906 days ago
Computer Theory & Genetics: George Chao at TEDxUMNSalon
...le disciplines as well as in Japan. Some of these researches include developmental genetics in Drosophila, computational techniques for analyzing protein interactions, and helping wit...3913 days ago
- +10 more Video
Bio-Scripts
Parse a genbank file using regular expressions
...$cds_end = $4; print "CDS: $cds_start - $cds_end\n"; } elsif (/(\/translation=")(.*)/) { # protein product begins print "Translation: "; $protein = $2; $trans = 1;...2915 days ago
Retrieve NCBI GenBank records with a range of accession numbers
#!/usr/bin/perl #FILE: ncbi_search.pl #AUTH: Paul Stothard (paul.stothard@gmail.com) use warnings; use strict; use Getopt::Long; use LWP::Simple; use URI::Es...2914 days ago
- +8 more Bio-Scripts
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
...anning kit based on this profile. Alterations in the gene, transcript, protein, and metabolite profiles betw...r was predicting the interaction between the prokaryotic two-component proteins. To be able to accurately pr...2360 days ago
Groups
...ed and developed in the mid-1990s by Yukihiro "Matz" Matsumoto in Japan. BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment,...3918 days ago
...mental topics in bioinformatics: assembling genomes, comparing DNA and protein sequences, predicting genes,...g evolutionary trees, analyzing genome rearrangements, and identifying proteins.3900 days ago
Tags
- Genome sequencing projects have enormous potential for benefiting human endeavors. However, just as acquiring a language's vocabulary does not enable one to speak it, databases that list the amino acid composition of proteins do not directly tell us much about these proteins' higher-level structu...
Tags: Protein, Motif, evolution, Blast, HMM, Dr. R.Sowdhamini, India
3883 days ago
- In a lot of my work in bioinformatics, I have been using hidden Markov models (HMMs). As a postdoc with David Haussler at UCSC we developed the so-called profile HMMs (refs). Since then I have applied HMMs to membrane proteins (refs) and gene identification (refs) and have worked on methods for s...
Tags: Bioinformatics, Computational Biology, Algorithms, Copenhagen, Protein
3867 days ago
- +7 more Tags
Comments
Comment on "Tools for Sequence translation !"
...a DNA or RNA sequence into its corresponding protein sequence. This is an importan...anslate a DNA sequence into its corresponding protein sequence. It supports several...perform reverse translation (i.e., convert a protein sequence into its correspondi...418 days ago
Comment on "FRODOCK 2.0: fast protein–protein docking server"
A web applet for browsing protein-protein interactions was implemented. It enables the display of interaction relationships, based upon neighboring distance and biological function. Availability: The Java applet is available at http://www.charite.de/bioinformatics1381 days ago
- +18 more Comments
