Results for "raw"
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...small RNA This tutorial covers initial steps of the workflow for analysis of short RNA expression such as a quality control of the raw reads, processing of the raw reads for the subsequent anal...3660 days ago
InfoGenomeR: Integrative reconstruction of cancer genome karyotypes
InfoGenomeR is the Integrative Framework for Genome Reconstruction that uses a breakpoint graph to model the connectivity among genomic segments at the genome-wide sc...1103 days ago
- ...ifferent, also they have different error type. High quality data is very important for further analysis or data mining. There are many pipeline for raw sequence quality analysis and...
3241 days ago
- ...plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC step. This repository accompanies the paper:Blobology: exploring raw genome data for contaminants,...
2890 days ago
- ...in the context of the entire sequences and their annotation. It can read complete EMBL, GENBANK and GFF entries or sequences in FASTA or raw format. ...
2804 days ago
- ...ygotes which are often collapsed by other assemblers. Its ultimate goal is to find a minimal set ofunitigs to represent all the information in raw reads.Fermi follows the overl...
2802 days ago
BLAST Ring Image Generator (BRIG)
...et of genes as input, BRIG can display gene presence, absence, truncation or sequence variation in a set of complete genomes, draft genomes or even raw, unassembled sequence data....2781 days ago
- ...ents that may contain hundreds or even thousands of species. One of the main challenges in analyzing a metagenome is phylogenetic classification of raw sequence reads into groups re...
2771 days ago
- ...et of genes as input, BRIG can display gene presence, absence, truncation or sequence variation in a set of complete genomes, draft genomes or even raw, unassembled sequence data....
2642 days ago
- ...-layered pie charts. Krona charts can be created using an Excel template or KronaTools, which includes support for several bioinformatics tools and raw data formats. The interactive...
2608 days ago
