Results for "raw"
Bio-Scripts
Retrieve NCBI GenBank records with a range of accession numbers
#!/usr/bin/perl #FILE: ncbi_search.pl #AUTH: Paul Stothard (paul.stothard@gmail.com) use warnings; use strict; use Getopt::Long; use LWP::Simple; use URI::...2923 days ago
- ...bject, default is "SEQUENCE" PROCESSING Read Splitting Sequence data may be used in raw form or...
2134 days ago
- ...ead data. IlluminaBasecallsToSam (Picard) Transforms raw Illumina sequencing data into...l) Collects quality yield metrics from SAM/BAM/CRAM file(s). CollectRawWgsMetrics (Picard)...
2083 days ago
Bash script to alignment of short reads against reference genome !
...z \ | samtools view -b - >SRR1770413.raw.bam sambamba sort SRR1770413.raw.bam sambamba markdup SRR1770...ng the BAM file: sambamba sort SRR1770413.raw.bam --- sort the BAM file, wr...gz \ | samtools view -b - >SRR341549.raw.minimap2.bam sambamba sort S...1567 days ago
- ...=> Searching for: String::FuzzyIndex ===> Updating cpan mirror: https://raw.githubusercontent.com/ugexe/Perl6-ecosystems/master/cpan1.json ===> Updated cpan mirror: https://raw.githubusercontent.com/ugexe/P...
1558 days ago
- (JitMetaENV) ➜ day2 conda install -c bioconda kraken2 Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen sol...
1223 days ago
- ...th that produces longest N50 # http://kmergenie.bx.psu.edu/ mkdir -p /genetics/elbers/test/fly2/kmergenie-illumina-raw-reads cd /genetics/elbers/test/fly2/kmergenie-illumina-raw-reads /genetics/elbers/kmerg...
936 days ago
Bash script to simulate a genome !
...th that produces longest N50 # http://kmergenie.bx.psu.edu/ mkdir -p /genetics/elbers/test/fly2/kmergenie-illumina-raw-reads cd /genetics/elbers/test/fly2/kmergenie-illumina-raw-reads /genetics/elbers/kmerg...925 days ago
- ....6-he881be0_1 perl-archive-tar-2.32-pl526_0 perl-carp-1.38-pl526_3 perl-common-sense-3.74-pl526_2 perl-compress-raw-bzip2-2.087-pl526he1b5a44_0 perl-compress-raw-zlib-2.087-pl526hc9558a2_0...
792 days ago
Download lumpy skin disease data !
Location https://www.ncbi.nlm.nih.gov/sra?linkname=bioproject_sra_all&from_uid=880745 The raw genome sequence data from the 2022 outbreak in India is available in the SRA Project PRJNA880745418 days ago
