Tools to detect synteny blocks regions among multiple genomes
...structural features of study species by comparing to a well annotated reference sequence, thus enabling genom...ure.com/scitable/topicpage/synteny-inferring-ancestral-genomes-44022 Reference: http://www.nature.com/scita...2624 days ago
Dynamic chromosome breakpoints !!!
...c.za/~darren/rdp.html RB-finder http://www.ncbi.nlm.nih.gov/pubmed/18707535 LDhat2.0 http://ldhat.sourceforge.net/LDhat2.0/instructions.shtml Reference: http://www.nature.com/scita...3567 days ago
Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
We demonstrate a novel approach forlocal alignment of DNA reads with respect to reference genome.For this process we have used Skip-gram model for creatingencoding(Nucl2Vec) and k-near...1160 days ago
Rdatamining.com : R and Data Mining
...esources on data mining with R. Documents on using R for data mining are available to download for non-commercial personal use, including R Reference card for Data Mining, R and D...3930 days ago
Regular Expression Cheat Sheet
...nd any good and user friendly regular expression cheat sheet, hence write our own cheat sheet. The Regular Expressions Cheat Sheet, a quick reference guide for regular expressions...3967 days ago
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Bio++ : C Language libraries for your biological need
...o/Tutorial on Bio++http://162.38.181.25/BioPP/articles/tutorial/index.htmlDownload Linkshttp://162.38.181.25/BioPP/articles/download/index.html Reference: http://162.38.181.25/BioPP/i...3962 days ago
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Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with script
...on and understand it with graphical version please visit http://www.planet-source-code.com/vb/scripts/ShowCode.asp?txtCodeId=75049&lngWId=1 Reference: 1.http://www.planet-source-...3839 days ago
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Vaccination can be dangerous sometimes !!!
...his study suggests a role for fusion-enhancing anti-HA2 antibodies in VAERD, in the absence of receptor-blocking virus-neutralizing antibodies. Reference: http://www.nature.com/news/...3909 days ago
2013 NextGen Genomics & Bioinformatics Technologies (NGBT) Conference, New Delhi, INDIA
...ed to host the Next-Generation Sequencing and Bioinformatics for Genomics & Healthcare conference. In the ten years since the first human reference genome was completed for US$3...3937 days ago
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Download the genome from NCBI using bash script/command
...mkdir "G$filename" cd "G$filename" # take action on each file. $f store current file name wget --input $f #cat $f cd .. done #Reference #ftp://ftp.ncbi.nlm.nih.gov/...2546 days ago
Genetic Algorithms demonstration with word DNA in Perl
...my $pop_ref = []; # a reference to a population array...$index = sample(\@weights); # we pass a reference to the weights array here...PAN Sample module) sub sample { # get the reference to the weights array my $we...2386 days ago
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Perl Special Vars Quick Reference
$_ The default or implicit variable. @_ Subroutine parameters. $a$b sort comparison routine variables. @ARGV The command-line args. Regular Expressions $<digit> Regexp parenthetical capture holders. $& Last successful match (degrades perfor...Tags: Perl; Special, Vars, Quick, Reference
2658 days ago
Comment on "Benchmarking Perl Module !"
...these function from the Benchmark module to run the benchmark. The timethese function takes two arguments: the number of iterations to run and a reference to the benchmark subroutine....429 days ago
Comment on "Short-read assembly using Spades !"
...This can be done using tools such as QUAST or BUSCO. These tools assess the completeness and accuracy of the assembled genome by comparing it to reference genomes or sets of conserved...429 days ago